Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01814 ATGTTGGCCATATCCCCTCCTTTGTTCTCAACAATTGGATGGCCTTTTGAAGAGACCATAAGCCATAATCTGCATCAGAATCACTTCTACAAAGACATTACTACTGATCAATTATTTGATATTAAAATTCAAGTTGAGGCTGAAAATTCAACTGATCCATCACAAGCCACAAGCTGTGATCTTAGTATGGTCAAGAAGCTAGTTCATAATGCTAGTGAACGTGATCGTCGCAAGAAGATCAATAATTTGTATTCTTCAATTCGTTCGCTTCTTCCCGTTTCAGATCAAATGAAGAAGTTGAGCATTCCGGCAACAATTTCGCGAGTCCTAAAATACATACCGGAGTTACAGAAACAGGTGGAAGGACTAATTAAGAGAAAGGAAGAGATGTTATTGAGATTATCCCCGCAAATCTATGAGATTTCATGTTACACTGTCCACAAGATTCCATTATCAGAGATCTTACTCTGTTTAGAAAATGATGGCCATTTGCTGCTGAATGTTTCTTCTTCTCAGACATTTGGAGGGAGGGACTTCTATAATTTGCATTTACAGGTGGATAAATCTCAGAGATTAGAATCCGATATTCTAAACGAGAAGCTCTTATCAAAAATGGAGAAAATGTGA 627 0.3748 MLAISPPLFSTIGWPFEETISHNLHQNHFYKDITTDQLFDIKIQVEAENSTDPSQATSCDLSMVKKLVHNASERDRRKKINNLYSSIRSLLPVSDQMKKLSIPATISRVLKYIPELQKQVEGLIKRKEEMLLRLSPQIYEISCYTVHKIPLSEILLCLENDGHLLLNVSSSQTFGGRDFYNLHLQVDKSQRLESDILNEKLLSKMEKM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01814 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Trre2g01814 208 CDD bHLH_AtORG2_like 65 135 - -
Trre2g01814 208 Coils Coil 113 133 - -
Trre2g01814 208 SMART finulus 70 122 IPR011598 GO:0046983
Trre2g01814 208 FunFam Transcription factor ORG2 60 144 - -
Trre2g01814 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 143 IPR036638 GO:0046983
Trre2g01814 208 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 201 - -
Trre2g01814 208 Gene3D - 60 142 IPR036638 GO:0046983
Trre2g01814 208 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01814 Trre-Chr2 14848739 14850920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01814 1 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 38.306 9.75e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01814 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01814 - - vvi:100262373 224.172