Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01812 ATGGTGAATGATACAAAGACATGTGATTCAATTAAGTACGATGATGATGGAGAAAGGATTGTGATGTTGTTTGGTGTAAACATTGCAAAAAAACCCACTAAAGTTGATGACACCATCAAGATCAGCAACAATAGCATGGAAGACATCAATTATATCCATGATGATGATAAGAATGAGAATTCTATTTGGGAACAACGGATCGAGAATGAGAATGAGAATAATTCCATGTTCAACAATGAAAAGATGAAAAAGGAATTTGAACAACGGAGTGAGAAGGAGAATGGGAATGACAATGACATTAACAAATTTCCAGAATTAGCTATTGTTCAAAGATTCAACCATGAAAGGATAAAAAGGGTGAAATCATGGACAGAGAAGGAGCACAAGGCTTTCTTGAAAGGTTTAAAGGCAGTTGGAAAAGGCAGATGGAAGAATATATCAAGAAACTTTGTGATAACCAAGACTCCAACTCAAGTTGCTAGTCATGCACAAAAATATTTTCAAAGAAATGAACCAATATTCTATAGAACCAAGCGCCAAAGCATCTTTGACATGAAACTTCTTGTATGGATGATGAATATGAAAATTCAAAAGCAGCTAGTGCTTAGGTTGTGA 615 0.3496 MVNDTKTCDSIKYDDDGERIVMLFGVNIAKKPTKVDDTIKISNNSMEDINYIHDDDKNENSIWEQRIENENENNSMFNNEKMKKEFEQRSEKENGNDNDINKFPELAIVQRFNHERIKRVKSWTEKEHKAFLKGLKAVGKGRWKNISRNFVITKTPTQVASHAQKYFQRNEPIFYRTKRQSIFDMKLLVWMMNMKIQKQLVLRL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01812 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Trre2g01812 204 Coils Coil 53 73 - -
Trre2g01812 204 CDD SANT 122 167 IPR001005 -
Trre2g01812 204 SUPERFAMILY Homeodomain-like 119 171 IPR009057 -
Trre2g01812 204 ProSiteProfiles SANT domain profile. 118 171 IPR017884 -
Trre2g01812 204 FunFam transcription factor MYB1R1 121 172 - -
Trre2g01812 204 Pfam Myb-like DNA-binding domain 121 167 IPR001005 -
Trre2g01812 204 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 169 IPR006447 GO:0003677
Trre2g01812 204 PANTHER TRANSCRIPTION FACTOR KUA1 6 186 - -
Trre2g01812 204 Gene3D - 121 173 - -
Trre2g01812 204 ProSiteProfiles Myb-like domain profile. 122 167 IPR001005 -
Trre2g01812 204 MobiDBLite consensus disorder prediction 71 99 - -
Trre2g01812 204 SMART sant 119 169 IPR001005 -
Trre2g01812 204 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01812 Trre-Chr2 14840396 14843951 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g01812 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01812 - - tpra:123891687 136.732