Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01807 ATGACAACAGCAAAAGAAACTTCAAACTTAGATCTCATACGCCATCATCTCTTAGAAAACACAAATTTTTTCACTTTCCTTGAAGGTTATGATTTAGTAGCAGATATGGAATTCTTTGGTAACACTTCTCAAAATGACACAAAAACTTCAAAGGAAATAAAGAAATCAAATTCGCCGGAACCGAAACCCGAACCGATAATTAGTACTATGGTGTCTTCAAAGAAGATTAAGAAAGAAGAAGAGTTTGTTGATGAAACAAGAAGATATAGAGGTGTAAGAAGAAGACCATGGGGGAAATTTGCAGCTGAGATACGTGATCCATCAAAGAAAGGAAGTAGAGTTTGGTTAGGTACATTTGATTGTGAAATTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTCAGAATGAGGGGTCAAAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTGTGTGTGATCCTAAGCCTAATAGTTGTGGTAGGAAAAGGAGAAGAGAAAGTGATCAAGTTGAAGCTTCAAGAAGTTCAGCTTCAAGTTCATGA 543 0.3628 MTTAKETSNLDLIRHHLLENTNFFTFLEGYDLVADMEFFGNTSQNDTKTSKEIKKSNSPEPKPEPIISTMVSSKKIKKEEEFVDETRRYRGVRRRPWGKFAAEIRDPSKKGSRVWLGTFDCEIDAAKAYDSAAFRMRGQKAILNFPLEAGVCDPKPNSCGRKRRRESDQVEASRSSASSS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01807 180 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Trre2g01807 180 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Trre2g01807 180 PRINTS Ethylene responsive element binding protein signature 128 148 IPR001471 GO:0003700|GO:0006355
Trre2g01807 180 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Trre2g01807 180 MobiDBLite consensus disorder prediction 154 180 - -
Trre2g01807 180 MobiDBLite consensus disorder prediction 44 66 - -
Trre2g01807 180 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Trre2g01807 180 PANTHER DNA-BINDING DOMAIN 48 166 IPR044808 GO:0003700|GO:0009873
Trre2g01807 180 MobiDBLite consensus disorder prediction 157 171 - -
Trre2g01807 180 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Trre2g01807 180 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Trre2g01807 180 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Trre2g01807 180 CDD AP2 96 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01807 Trre-Chr2 14759439 14760047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01807 1 175 AP2-EREBP Transcription Factor Family AT5G07580 40.796 1.31e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g01807 AP2 3.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01807 - - gmx:100305726 203.756