Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01797 ATGGGGAATACTTGTGTTGGTCCTAGCATTTCAAAGAATGGTATTATTCAATCATTTTCTGCGGCGATTTGGCGGACGCAATTGCCTGATCCTGAAGGATCAGTGTCTAATAGAGGATCGGTAAATGAGGGGAGAAACGATAATGAGCCCGAATCTTCGTTGCCTGTTCAAAATAAACCTCCTGAGCAGATAACTATACCGAAACCAGAAACAAAACAAGAGACGAAATCAGAACCGGAGTCCGAGAAGGAGAAGAAAAAACACAAGAGACCTTCTGTTAAGAGAAGTTCTAGTGCAGGACTTCGTGTTGATTCCGTGTTGCTACGAGAAACTGGTAATTTCAAGGAGTTTTTTAGTCTTGGGAGGAAACTTGGACAAGGTCAATTTGGGACAACGTTTTTGTGTATCGAGAAAGAAACCGGATATCAGTTTGCGTGTAAGTCTATTGCGAAGAGGAAACTAGTAACCGACGAGGATGTTGAGGATGTGAGAAGAGAAATTCAGATAATGCACCATTTGGCTGGACATCCTAATGTTATATCAATTAAAGGTGCTTATGAGGATGCAGTGGCTGTTCATGTTGTGATGGAATTATGTGCAGGCGGTGAGCTTTTTGATCGGATTATTCAGCGCGGACACTATACTGAAAGAAAGGCGGCTGAACTTATTAGGACTATTGTTGGTGTTGTTGAAACTTGTCATTCTCTTGGTGTGATGCATAGAGATCTTAAACCGGAGAATTTTCTCTTTGTCAATGAGCAAGAGGATGCGCTACTCAAAACTATTGACTTTGGATTATCGGTGTTCTTTAAGCCAGGTGATATATTTATCGATGTGGTTGGCAGTCCATATTATGTTGCTCCAGAAGTTTTGAAAAAACGTTACGGTCCTGAAGCCGATGTTTGGAGTGCCGGCGTTATCCTTTACATTCTTTTGAGTGGAGTACCTCCATTTTGGGCTGAAAGCGAACAAGGGATATTCGAACAGGTTATGCGTGGTGATCTTGACTTCGATTCAGATCCATGGCCTGTAATTTCTGAAAGTGCAAAAGATTTAGTACGGAAAATGCTTGTTCGTGACCCTAGAAGGCGGATGACTGCACATCAAGTATTATGTCATCCTTGGGTTCAAGTTGACGGTGTAGCTCCTGACAAGCCCCTTGATTCCGCCGTATTAAGTCGATTGAAGCAATTTTCTGCTATGAACAAGCTCAAGAAAATGGCCCTTATAGTCATTGCAGAGAGCTTATCCGAAGAAGAATTAGCTGGCTTAAAAGAAATGTTCAAGATGATCGATACAGATAACAGTGGTCAAATCACTTTCGAAGAACTTAAAGTTGGTTTGAAAAAAGTTGGTGCTAATCTTAAGGAGTCTGAAATTTATGATTTAATGCAAGCGGCTGACGTAGATAACAGTGGAACGATTGATTATGGTGAGTTCATTGCGGCAACGTTGCATATTAACAAGATTGAAAGAGAAGATCATCTATTCGCTGCTTTTTCTTACTTTGATAAAGATGGAAGTGGCTATATTACTCAAGAAGAACTTCAACAAGCTTGTGATGAGTTTGGTATTAAAGATGTTCGCTTGGAAGAGATAATCAAGGAAATTGATGAAGATAATGACGGGCGCATAGATTATAACGAGTTTGTGGCTATGATGCAGAAAGGAAATCCTATGGTTGGTAAGAAAGGCCTCGAAAATAAATTCAGCATTTGTTTCAAGGAGGCATTAAAATTGTAG 1743 0.4039 MGNTCVGPSISKNGIIQSFSAAIWRTQLPDPEGSVSNRGSVNEGRNDNEPESSLPVQNKPPEQITIPKPETKQETKSEPESEKEKKKHKRPSVKRSSSAGLRVDSVLLRETGNFKEFFSLGRKLGQGQFGTTFLCIEKETGYQFACKSIAKRKLVTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELIRTIVGVVETCHSLGVMHRDLKPENFLFVNEQEDALLKTIDFGLSVFFKPGDIFIDVVGSPYYVAPEVLKKRYGPEADVWSAGVILYILLSGVPPFWAESEQGIFEQVMRGDLDFDSDPWPVISESAKDLVRKMLVRDPRRRMTAHQVLCHPWVQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAESLSEEELAGLKEMFKMIDTDNSGQITFEELKVGLKKVGANLKESEIYDLMQAADVDNSGTIDYGEFIAATLHINKIEREDHLFAAFSYFDKDGSGYITQEELQQACDEFGIKDVRLEEIIKEIDEDNDGRIDYNEFVAMMQKGNPMVGKKGLENKFSICFKEALKL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01797 580 Gene3D Phosphorylase Kinase; domain 1 120 203 - -
Trre2g01797 580 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Trre2g01797 580 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Trre2g01797 580 SMART efh_1 529 557 IPR002048 GO:0005509
Trre2g01797 580 SMART efh_1 495 523 IPR002048 GO:0005509
Trre2g01797 580 SMART efh_1 459 487 IPR002048 GO:0005509
Trre2g01797 580 SMART efh_1 423 451 IPR002048 GO:0005509
Trre2g01797 580 ProSitePatterns EF-hand calcium-binding domain. 538 550 IPR018247 -
Trre2g01797 580 Pfam Protein kinase domain 119 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01797 580 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Trre2g01797 580 FunFam Calcium-dependent protein kinase SK5 204 388 - -
Trre2g01797 580 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Trre2g01797 580 FunFam Calcium-dependent protein kinase 1 384 558 - -
Trre2g01797 580 Pfam EF-hand domain pair 424 484 IPR002048 GO:0005509
Trre2g01797 580 Pfam EF-hand domain pair 494 555 IPR002048 GO:0005509
Trre2g01797 580 CDD EFh 495 555 IPR002048 GO:0005509
Trre2g01797 580 ProSiteProfiles EF-hand calcium-binding domain profile. 529 560 IPR002048 GO:0005509
Trre2g01797 580 SMART serkin_6 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01797 580 SUPERFAMILY EF-hand 416 557 IPR011992 -
Trre2g01797 580 ProSiteProfiles Protein kinase domain profile. 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01797 580 SUPERFAMILY Protein kinase-like (PK-like) 118 377 IPR011009 -
Trre2g01797 580 PANTHER SERINE/THREONINE-PROTEIN KINASE 101 550 - -
Trre2g01797 580 MobiDBLite consensus disorder prediction 27 97 - -
Trre2g01797 580 FunFam Calcium-dependent protein kinase 1 120 203 - -
Trre2g01797 580 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Trre2g01797 580 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Trre2g01797 580 CDD STKc_CAMK 117 375 - -
Trre2g01797 580 MobiDBLite consensus disorder prediction 27 60 - -
Trre2g01797 580 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Trre2g01797 580 MobiDBLite consensus disorder prediction 69 87 - -
Trre2g01797 580 CDD EFh 424 483 IPR002048 GO:0005509
Trre2g01797 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Trre2g01797 580 Gene3D Transferase(Phosphotransferase) domain 1 204 400 - -
Trre2g01797 580 Gene3D - 401 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01797 Trre-Chr2 14672238 14676739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01797 1 575 EF-hand Containing Proteins AT5G04870 75.327 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre2g01797 Pkinase 2.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01797 K13412 - gmx:100797449 973.385