Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01769 ATGGATGATGACTACATGATGGACATGGAAATGGACATGGATGTTCCTCTTCCCGAAGAACTCGAATTACTCGAATCAACCTATCGCATCTACGAACAACAACAAGACCAAGAACAAGACCACTACTTTTACCAACCACCCGAAGACGAAACCGAATCCGAACCACAACCGCCACAAGATCTAGTTTCTCCTTCCGAACCTCAATCAAACAGCCACAAACGTTCTCGTTCGAAATCGAATTCGGATTCCGATTTGGATGATTTGGATTCTTCTGGTGTTGAAAAAAGAGAGAAAGTTAGGGTTAGGGTTGAAGATCCACCTGTTGAAGAGGATTGGCTTCGATACTCTCCTCCTCCTACTACTACTACTACTTCAGTTGAAGAAGTGAGATTCTCTAAGCAGAAGACGTTGTCGCGATTTGCGTCGGAGATTGATGGTGAAGTTATGCCGATTACTGCGCCTAATGGAGATAGGGTTTATACTAAGCTTGATAGGTTCTATGGAGATGAGCAAGTGACGAAGCTGAATTGTAGAGGATATTCTTCTGATCTTGCTATAGAACCGATTAGTGTTCTGTTTGAAAGGTTGGAGCAAGAGACTTTTGCTAAGACCTTGGCAGCTAGTTCTGAAAGCCAAAGTGTTGTAGATGTTCCTGAAACACCAACAGTCCATGAAAAACTTTGGGTCGAAAAATATGCCCCAAAGTCGTTTACTGATCTTCTTAGTGATGAACAGACAAATCGTGAGGTACTCTTGTGGTTAAAACAATGGGATTCTACCGTGTTTGGATCTGAAATACGAAGCACATCAGACGACGTTTTGTCTGCTTTGAAACGGCATTCTTCTATTTCCCATAAACCGAAACCTATGGGCTCAAATTTCCCAAGAACAAATGGAGGGCACAATTGGAGTAGTAACAGGTATACAAATTATAGAAGTACGGCGGAGAGTGGAAATTCAACGAGTATTCAGGATATACGCAATGCAAAGTCACGGAATATTGGCGCACCAGAACAGAAGGTCCTTCTGCTATGTGGACCACCAGGTCTCGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGTGGATATCACGTGGTAGAGGTTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTTGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCTAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGGGATGGAAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCTGATGCAGGGAAGCAAAGTTTGGATAAAGGACAAATGGAAAGGAAATCATCAAAGAAGGGGCGAAAAACTGCATCCCTGTCAAGACCTGTGATTTGCATATGTAATGACCTATATGCACCTGCCTTAAGATCATTACGCCAAGTGGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGGGTGGTAAGCAGACTAAAATATATATGTAACAAGGAAGGGGTCAAAGCCAGTGCCATTGCACTCACTGCTTTAGCGGAATATACAGCATGTGATATACGCTCATGCTTGAACACTCTCCAATTTCTCTCTAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGTTCGCAAGTTGTTGGTCAGAAGGACATGTCGAAAAATGTTCTGGACATCTGGAAAGAGTTGTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAAATCTCATAATAGCAAATTCTCTGAATTTGATACCTTGTACTCCCTTATATCATACCGTGGTGATAGTGACCTCATTTTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACTGTCAAGTGCCTCAACAGTCTTGAAGTTTATGATCTGTTGCATCAGTATATAATGCGTACACAACAAATGCCTCTACTAGTTCATTTACCTCCCATAGCAATTATTGTACATCATACAGTAGCTCAAGTTCAGAAGCCAAACATTGAGTGGCCAAAGTCATATCACAGGTATCGAACAACAATGATGGAAAAGATGGACATTTTGAATACTTGGCACTACAAAATATCGCCACATATTGCAAGGCACTTATCACCTACTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTGGATATTCTGTCCCCACCAACCATAAGACCGGTGGCATTACAACTACTATCGGATAAGGAGAAGAATGATATTGCTCAATTAGTTAGCACAATGGTCTCATATGCTATCACATATAAGAAAATGAAATCAGATGCACTGCCTAATACCCTGAAGTATGAAGTAGCAGATGAATTGTCTTTGTCTCTTGTTCCTTCTATCGGTAACTTTATAAACTTTAAGGATTATACTTCAAACCATTACGTGCTTTCTTTACCTATGAAGCAAGTTTTGGTGCATGAAGTTGAAAAGCATAAGATTTTACAAGCTAATGCTAAAACTGCGACTTTAGCAAATGGAGGGAATGAAGTTAATGAGGCTGGAAATAACATCATATTTGCAAATACCAAGAATCATGCAGCTGTAGTTGATATGAAAACCATTGAAAGTCAAACTAGTGTTTTAGCAATGAAATCAAATGAATATCCCAAGACAGTTTCACCAAACTTGAATCTCACTAAAATTGCAAATGCAACAGACGGTGCGAAACTTCTAGACATGGGAAATAAGAAAAAACCATCTAGGAGTTCCTCAAATTTCTTCGACAGGTTTAAAAAGTCAAGTGGTAAGGGACTCCAAAATGATGACAGATCTCTACAGAAAGAAACTACATCAGAGAAAGTTCAAAGCCCTTTACTTTTTAAATTTAATGAGGGTTTTACAAATGCAGTCAAAAGGCCTGTTCGAATTCGTGAATTTCTGTCCTAG 2913 0.3979 MDDDYMMDMEMDMDVPLPEELELLESTYRIYEQQQDQEQDHYFYQPPEDETESEPQPPQDLVSPSEPQSNSHKRSRSKSNSDSDLDDLDSSGVEKREKVRVRVEDPPVEEDWLRYSPPPTTTTTSVEEVRFSKQKTLSRFASEIDGEVMPITAPNGDRVYTKLDRFYGDEQVTKLNCRGYSSDLAIEPISVLFERLEQETFAKTLAASSESQSVVDVPETPTVHEKLWVEKYAPKSFTDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSDDVLSALKRHSSISHKPKPMGSNFPRTNGGHNWSSNRYTNYRSTAESGNSTSIQDIRNAKSRNIGAPEQKVLLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEVLLKMISAERKPDAGKQSLDKGQMERKSSKKGRKTASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKASAIALTALAEYTACDIRSCLNTLQFLSKKKETLNAFDIGSQVVGQKDMSKNVLDIWKELFQRKRTKKMERKSHNSKFSEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLNSLEVYDLLHQYIMRTQQMPLLVHLPPIAIIVHHTVAQVQKPNIEWPKSYHRYRTTMMEKMDILNTWHYKISPHIARHLSPTSFVEDLISPLLDILSPPTIRPVALQLLSDKEKNDIAQLVSTMVSYAITYKKMKSDALPNTLKYEVADELSLSLVPSIGNFINFKDYTSNHYVLSLPMKQVLVHEVEKHKILQANAKTATLANGGNEVNEAGNNIIFANTKNHAAVVDMKTIESQTSVLAMKSNEYPKTVSPNLNLTKIANATDGAKLLDMGNKKKPSRSSSNFFDRFKKSSGKGLQNDDRSLQKETTSEKVQSPLLFKFNEGFTNAVKRPVRIREFLS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01769 970 SMART AAA_5 338 492 IPR003593 GO:0016887
Trre2g01769 970 CDD AAA 318 431 - -
Trre2g01769 970 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g01769 970 Gene3D - 489 559 - -
Trre2g01769 970 FunFam Chromosome transmission fidelity protein 18 489 556 - -
Trre2g01769 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 543 IPR027417 -
Trre2g01769 970 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 11 969 - -
Trre2g01769 970 Pfam ATPase family associated with various cellular activities (AAA) 342 468 IPR003959 GO:0005524|GO:0016887
Trre2g01769 970 MobiDBLite consensus disorder prediction 1 19 - -
Trre2g01769 970 MobiDBLite consensus disorder prediction 923 938 - -
Trre2g01769 970 MobiDBLite consensus disorder prediction 284 305 - -
Trre2g01769 970 MobiDBLite consensus disorder prediction 433 454 - -
Trre2g01769 970 Gene3D - 225 487 IPR027417 -
Trre2g01769 970 MobiDBLite consensus disorder prediction 433 452 - -
Trre2g01769 970 MobiDBLite consensus disorder prediction 27 104 - -
Trre2g01769 970 MobiDBLite consensus disorder prediction 71 104 - -
Trre2g01769 970 MobiDBLite consensus disorder prediction 56 70 - -
Trre2g01769 970 CDD HLD_clamp_RFC 489 547 - -
Trre2g01769 970 MobiDBLite consensus disorder prediction 900 939 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01769 Trre-Chr2 14465821 14480146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01769 301 536 Core DNA Replication Machinery Family AT5G22010 30.279 2.80e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01769 K11269 - gmx:100791474 1309.28