Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01746 ATGGAGGAGGATATGAAAATTGTTGATATTGTTGATGTTCCTGATACCCCAGATAGACCAAAAGCTGGAAACCATGCTAAAAAATGTGTAGGTAATCCCGAGAAGAGGGAGAGGGCTTTTCCTGTTGCTGGTGAAATAAGTAACTACAACAACTATATAATATTGTCTCCAGGTCCGGATGATAAACCTTATCCATCTCAAAATGCTCCCATATTTCGGAGAGCACAAGCTGAGAAAGTTTATGGAACTGGGACATCACACTCTAATGGAGCTGAAAAGATGGAGAAAGGGAAAACTGTAAGCTCCAAGGTTTCTTCTAGGTCATCTCACCATGGGCATTTTTCTGTTTTCGATTTGACTGAAAAGAATGGGCAGTTCCAACAACCAAAACCATCTTTCTCACATCGTGGATCAAGAGATAACACAATTGAAGACAAGAAAGAAGTGAAAGCAAGTATTGGGAATTCTTCGTCACCCTTAATCACTAGTTCTTCTAATACATCCAGAAATGCCGTCACCGGAAAGTATGAACCAGATAACAAAACACTTCAAATTCCTAAAATGTTTATGGACCGTGGCAAGAGCATTGCTCTGTCCAATGATTCTCAATCTCAACCGAAAGTTGAAAATCAACTTCCTCTGCCTTCTCGTCTTACCACTGCAATAAGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCGCCACATAATATTGCAACGAGGGCAAAACAATCAGCTGAACAGAGCAGCCCTCAAACCAATGATGTTGAACAGATCTTTGCTGGAAATTCAGTTTCTAACAATACAATGTCTCCGATTAGTGTTGATGATATTGTTGCTGAAGAGAGAGGCGGTGGCAGAGTGAAAGGAAAAGGAGTGCTTATTCATCCTTCACATGGAGCTAGTGCTAGAACTATTCACACTGATAGCAGCCCTGTGGTCAATTCTGAAGAGGCCAGTGGCAGCAGTAATAAACCAATAAATTTAGTTGGAAACTTGGAGAGACAAAGTGGTTGGAGAACTACACATAATGATGTGAATGGGCATCATTCAAGGAGAAGTTTCAATGAAAAATTTATTCACAGACAGAATATGAACAGTATAGAAAGAAGTGACACTGGGAGCAGTCAAAATGGCAAGGATGTAGGTCAGTCTGCTGGACCTAGTACTATTGCTGACTCACTGACTAAAAGGCAAAGGAAACGGGAATCATCTTCTAGAAATCCTAATGTAGCATCTCATAATTCTGAAACTATATTCGTCAATTCATCTGGGGAATCATCAAGTTCATCCCGAAGCCGTGTCCTGGATCCTGAATTTGAGTTGTTATCCAGATCAAGTTCCACCAACGGACTGAATGAAGGTTTAAATGACAATGACAACAATAGTTCCGTTGCTCGAGCAATGCAATTAGAAGCAGATGAGATGTTGGCACGTGAACTCCAAGAACAGATGTATAATGATGATTATTTTGAAGACAGTTGGATTGATGAACATATAGCACGGGAGCTGCAGGATGAAGCGGATCTTCTGCACACATCTACTGTTAATAATCAGATACCTCATCCTTCATGGGCTCCGAGGGAAAATAGACAGCCCCGTTCACGACCACAACAAAATCCTTCAAATAGGAGGAGAACTGTGCCTCAAGTTCCTCTCTCTAATAGAACCTCACAGTTGAGGAGTCGCGTGATAACTCGATCGTCAAGGCCTACCATATCATCTAGAGGAAGAGGGCGAGGACGAGGAAGAGGAAGACTCCCCCGGTTTCCTCTAGATATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAAGATGCAGTGGGGGATTTTAATGATATGGGAATGGGAGATGACATCCTTAATGCTCATCGTGATTTCAATGAAGATGATTATGAAATGTTATTGGCCCTTGATGACCAAAATCACCAGCATACCGGTGCATCTACCAATCTGATCAATAGCTTGCCACAGTCCACTGTCCAGACTGACAACTTCACCGAGGACTGTGCCGTATGTCTTGAGACCCCTGCCAGGGGAGAAATTATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGATTGTATTGATCCTTGGCTTAGTAGGAAAAGGTCGTGCCCGGTGTGCAAGTCATCTATCACCTAA 2163 0.4216 MEEDMKIVDIVDVPDTPDRPKAGNHAKKCVGNPEKRERAFPVAGEISNYNNYIILSPGPDDKPYPSQNAPIFRRAQAEKVYGTGTSHSNGAEKMEKGKTVSSKVSSRSSHHGHFSVFDLTEKNGQFQQPKPSFSHRGSRDNTIEDKKEVKASIGNSSSPLITSSSNTSRNAVTGKYEPDNKTLQIPKMFMDRGKSIALSNDSQSQPKVENQLPLPSRLTTAIRGRGHKRLVRNGCISPHNIATRAKQSAEQSSPQTNDVEQIFAGNSVSNNTMSPISVDDIVAEERGGGRVKGKGVLIHPSHGASARTIHTDSSPVVNSEEASGSSNKPINLVGNLERQSGWRTTHNDVNGHHSRRSFNEKFIHRQNMNSIERSDTGSSQNGKDVGQSAGPSTIADSLTKRQRKRESSSRNPNVASHNSETIFVNSSGESSSSSRSRVLDPEFELLSRSSSTNGLNEGLNDNDNNSSVARAMQLEADEMLARELQEQMYNDDYFEDSWIDEHIARELQDEADLLHTSTVNNQIPHPSWAPRENRQPRSRPQQNPSNRRRTVPQVPLSNRTSQLRSRVITRSSRPTISSRGRGRGRGRGRLPRFPLDMDLDMRLDILEALEDAVGDFNDMGMGDDILNAHRDFNEDDYEMLLALDDQNHQHTGASTNLINSLPQSTVQTDNFTEDCAVCLETPARGEIIRHLPCLHKFHKDCIDPWLSRKRSCPVCKSSIT 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01746 720 MobiDBLite consensus disorder prediction 83 179 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 302 436 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 152 177 - -
Trre2g01746 720 PANTHER SI:CH211-59O9.10 339 720 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 137 151 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 518 578 - -
Trre2g01746 720 CDD RING-H2_PA-TM-RING 674 716 - -
Trre2g01746 720 ProSiteProfiles Zinc finger RING-type profile. 675 716 IPR001841 -
Trre2g01746 720 Pfam Ring finger domain 674 716 IPR001841 -
Trre2g01746 720 MobiDBLite consensus disorder prediction 12 34 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 518 591 - -
Trre2g01746 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 720 IPR013083 -
Trre2g01746 720 SUPERFAMILY RING/U-box 674 719 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 120 136 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 411 436 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 369 397 - -
Trre2g01746 720 SMART ring_2 675 715 IPR001841 -
Trre2g01746 720 MobiDBLite consensus disorder prediction 348 368 - -
Trre2g01746 720 MobiDBLite consensus disorder prediction 306 347 - -
Trre2g01746 720 FunFam RING/U-box superfamily protein 640 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01746 Trre-Chr2 14121109 14126225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01746 8 720 C3H Transcription Factor Family AT1G04790 32.586 1.74e-79 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01746 - - tpra:123897569 1187.56