Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01735 ATGGATCCCCTTGCTTCTGTGGATGACCTTTTGGATTTCTCATCTGACATAGGTGAGGATGATGATGACGACGACAAACCTAAGAAAGACATTCCTTCACTTGATCCGAAATGCAGTGATCCACCGTCACTTAGTCCATTGGGCCTGGATGATCCTAACCATTCATTTCCTGAGTATGCAGAAGAGGAGCTGGAATGGCTATCGAACAAAGATGCATTTCCGGCTGTTGAAACATTTGTTGACATATCCTGTATTCAACCGGATATGTCGAAATATCAAAAGACAACCCCAATGCTCGAGAACAGCACAAGCAGTAGCAACAACAGCAATAACAGTTCGAACAGCATTACCCTCTTAAGTGGCTACAATCAAATGAAGTTCCCTGTTCGTGCAAGGAGCAAGTCTCGTAGTAAGCCTCGCCTTGTTGACTCCTTGAACCAGCAATTCCCGTGGAAACAGCCGAGTAACAAAATTTCCAGAGAACAACCGAAACAAACCTCAAACACTGGGAGGAAATGTCATCACTGCGGAGCTGATAATACTCCACAATGGCGTGCAGGTCCTGATGGTCCTAAAACCCTCTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTGCCTGAATACCGCCCTGCAAATAGCCCAACTTTTCGCCGTGAGGTTCATTCTAATTCCCACAGGAAAGTACTGGAGATGAGGAGGCAGAAGGGAATGGGATGA 726 0.4614 MDPLASVDDLLDFSSDIGEDDDDDDKPKKDIPSLDPKCSDPPSLSPLGLDDPNHSFPEYAEEELEWLSNKDAFPAVETFVDISCIQPDMSKYQKTTPMLENSTSSSNNSNNSSNSITLLSGYNQMKFPVRARSKSRSKPRLVDSLNQQFPWKQPSNKISREQPKQTSNTGRKCHHCGADNTPQWRAGPDGPKTLCNACGVRYKSGRLVPEYRPANSPTFRREVHSNSHRKVLEMRRQKGMG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01735 241 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Trre2g01735 241 Gene3D - 163 237 IPR013088 GO:0006355|GO:0008270
Trre2g01735 241 SMART GATA_3 167 217 IPR000679 GO:0006355|GO:0043565
Trre2g01735 241 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Trre2g01735 241 MobiDBLite consensus disorder prediction 93 175 - -
Trre2g01735 241 CDD ZnF_GATA 172 221 IPR000679 GO:0006355|GO:0043565
Trre2g01735 241 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 231 - -
Trre2g01735 241 MobiDBLite consensus disorder prediction 1 56 - -
Trre2g01735 241 FunFam GATA transcription factor 163 241 - -
Trre2g01735 241 PANTHER GATA TRANSCRIPTION FACTOR 7 239 - -
Trre2g01735 241 MobiDBLite consensus disorder prediction 93 122 - -
Trre2g01735 241 MobiDBLite consensus disorder prediction 140 174 - -
Trre2g01735 241 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01735 Trre-Chr2 14025985 14027611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01735 1 237 C2C2-Gata Transcription Factor Family AT3G24050 40.741 2.29e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre2g01735 GATA 1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01735 - - psat:127090991 356.681