Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01731 ATGGATGATGAATATTCTGTGAAGGCTCGCCCATATTTTTCTTCGTCACCAATACCGTTTTTCCCGTCTGATTCTTGCACCTATCTTAACAAACAAACTATTTCATCCCATATATATTTCAATATCCAATTTGATTATACAATTATTTTTGTTCCAACTGATGGAAAAGGATCTTTTGGATATAAACAACATCACGATCTTTATAATGTGTCAATGGAACAAATGATGCAAGAAACAACCTTTGTATCATGGTTTTCTAAATTTAATGTTCCTAAAGATGCTTTTAGGTTGGTGTTTGATAAAATATGTAAATGTGCTAATGATATGCTTAGTGGGGAATACAAGGACCTAAGTGTTCTTACTATTCGAGTTGATTTAGTTGTTACGAGGCCTGATGAAGAGGAAGAGGAAGAGGAAATGGAGGTTGAAGAACAAGATGAAGATAGTGAGTTGGTTCCTGCTATTACAAGGGCTACTGCTATGAAGGGTGAAAGTTGTGAAGGTCATTATAAAGATGAAGAGAACAATTGTTTGGAGGAGGAGGAGGATGAAGAAGAAGAAGAAGATAATGAATTGGTTTCTGCTAGGGCTATTGAAGGTGAAAGTTATGAAGTTGATTATGAAGACTATTCCGGCTATGGTGGCAACAATGACTTGGATGAGGATGAAGAGGAAATGGAGGACGAAGAAGAAGAGTATAATGAGTTGGTTCCTGCTATTACAAGGGCTAGTGAGGGTGAAAGTTATGAAGTTGATTACGAAGACAATTACGGCTATGAAGACATCAATGGTTTGGAAGAGGATGAAGAGGAGATGATGGTTGAAGAAGAAATTAATTGGTTTATTCCTGCGGATAAGTCTTGTATCGAGGAATTGGAGATGGTAAAAGTTGACGAAGTTGCAAAGTGCGTTATTTGTTTCGAAGATTTTAATGTTGGTGTCCGATTGCCATGTTCGCATATGTTTCATGCGAATTGTATTCAAGATTGGTTGCTGGTAGGCAACTCTTGCCCCTTGTGTAGGTTCCAATTGCCTACTGCAAACGCTAGTTTATAA 1056 0.3741 MDDEYSVKARPYFSSSPIPFFPSDSCTYLNKQTISSHIYFNIQFDYTIIFVPTDGKGSFGYKQHHDLYNVSMEQMMQETTFVSWFSKFNVPKDAFRLVFDKICKCANDMLSGEYKDLSVLTIRVDLVVTRPDEEEEEEEMEVEEQDEDSELVPAITRATAMKGESCEGHYKDEENNCLEEEEDEEEEEDNELVSARAIEGESYEVDYEDYSGYGGNNDLDEDEEEMEDEEEEYNELVPAITRASEGESYEVDYEDNYGYEDINGLEEDEEEMMVEEEINWFIPADKSCIEELEMVKVDEVAKCVICFEDFNVGVRLPCSHMFHANCIQDWLLVGNSCPLCRFQLPTANASL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01731 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 350 IPR013083 -
Trre2g01731 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 179 345 - -
Trre2g01731 351 MobiDBLite consensus disorder prediction 162 230 - -
Trre2g01731 351 MobiDBLite consensus disorder prediction 215 230 - -
Trre2g01731 351 SMART ring_2 303 340 IPR001841 -
Trre2g01731 351 ProSiteProfiles Zinc finger RING-type profile. 303 341 IPR001841 -
Trre2g01731 351 CDD RING-H2_PA-TM-RING 303 341 - -
Trre2g01731 351 MobiDBLite consensus disorder prediction 130 150 - -
Trre2g01731 351 MobiDBLite consensus disorder prediction 176 192 - -
Trre2g01731 351 MobiDBLite consensus disorder prediction 131 149 - -
Trre2g01731 351 Coils Coil 216 236 - -
Trre2g01731 351 SUPERFAMILY RING/U-box 302 346 - -
Trre2g01731 351 Coils Coil 170 198 - -
Trre2g01731 351 Pfam Ring finger domain 302 341 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01731 Trre-Chr2 13979099 13980154 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01731 298 347 C3H Transcription Factor Family AT3G60080 56.604 1.01e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01731 - - tpra:123898854 364.77