Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01729 ATGGATGAATATTGTGTCAAAGCAGGTCCATATTTTTCTTTGTTACCATTATTCCCATCCCCTGCTTCTTCCACCTATCTTAATAGACAAACTATTTCATCCCATATATATTTCAATATACAGTTTGATTATACAATTATTTTTGTTCCAACTGATGGAAAAGGATCTTTTGGATATAATGAACTTCACGCGCTTAATAACGTGTCAATGGAACAAATGATGCAAGAAACAACCTTTGTATCATGGTTTTCTAAATTTAATGTTCCTAAAGATGCTTTTAGGTTGGTGTTTGATAAAATATATCAATGTGCTAATGATATGCTTAGTGGGGAATACAAGAACCTAAGTGTTCTAACTATTCGAGTTGATTTAGTTGTTACGAGGCCTGATGAAGAGGAAGAGGAAGAGGAAATGGAGGTTGAAGAACAAGAAGATAGTGAGTTGGTTCCTGCTATTACAAGGACTATGAAGGGTGAAAGTTGTGAAGGTGATTATAAAGATGAAGAGAACAATTGTTTGGAGGAGGAGGAGGATGAAGAGGAAATAGAAGTTGAAGAAGAAGAAGATAATGAGTTGGTTTCTGCTAGGGCTATTGAAGTTGAAAGTTTTGAAGTTGATTATGAAGATAATTATGATGGCAATGATGGTTTGGATGTGGATGAAGAGGAAATGGAGGATGAAGAAGAAGAGTATAATGAAAGTTATGAAGTTAATTATGAAGACAATTATGGCTATGAAGGCAACGATGGTTTGGAAGAGGATGAAGAGGAAATGATGGTTGAAGAAGAAATTAATTGGTTTATTCCTGCGGCTAAGTCTTCTATCGAAGAATTGGAGATGGTAAAAGTTGAACAAGTGGCACAATGTGTTATTTGTTTTGAAGATTTTAATGTTGGTGCCCGATTGCCATGTTCGCACATGTTTCATGCGAATTGTATTCATGATTGGTTGGTGGTTGGCAACTCTTGCCCCTTGTGTAGATTCTGTTGA 990 0.3576 MDEYCVKAGPYFSLLPLFPSPASSTYLNRQTISSHIYFNIQFDYTIIFVPTDGKGSFGYNELHALNNVSMEQMMQETTFVSWFSKFNVPKDAFRLVFDKIYQCANDMLSGEYKNLSVLTIRVDLVVTRPDEEEEEEEMEVEEQEDSELVPAITRTMKGESCEGDYKDEENNCLEEEEDEEEIEVEEEEDNELVSARAIEVESFEVDYEDNYDGNDGLDVDEEEMEDEEEEYNESYEVNYEDNYGYEGNDGLEEDEEEMMVEEEINWFIPAAKSSIEELEMVKVEQVAQCVICFEDFNVGARLPCSHMFHANCIHDWLVVGNSCPLCRFC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01729 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 170 328 - -
Trre2g01729 329 Pfam Ring finger domain 288 327 IPR001841 -
Trre2g01729 329 SMART ring_2 289 326 IPR001841 -
Trre2g01729 329 SUPERFAMILY RING/U-box 288 328 - -
Trre2g01729 329 Coils Coil 165 190 - -
Trre2g01729 329 ProSiteProfiles Zinc finger RING-type profile. 289 327 IPR001841 -
Trre2g01729 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 329 IPR013083 -
Trre2g01729 329 MobiDBLite consensus disorder prediction 168 192 - -
Trre2g01729 329 Coils Coil 217 237 - -
Trre2g01729 329 MobiDBLite consensus disorder prediction 161 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01729 Trre-Chr2 13967727 13968716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01729 269 328 C3H Transcription Factor Family AT1G26800 39.062 1.44e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01729 - - tpra:123898854 315.464