Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01721 ATGACTAACATTGCCAAGGAGTTCCCTGATTTCTTATCAGTCTTTCATGCAGAGAAGCACTCTGAGAGAATGCTTATCCCAGATGCTTTTGTGAGCTTAATGCTTTCAAAACAAAAGGTATTGAAGAATTTTATCTTGAGAGATCATAGAGGAAGAGATTGGCATGTCAGAACGCGTCCTATTGGCGGCAAGCTTTATTTTAATGATGGCTGGAAGAGATTTAGAGAAGAAAATTGTTTAGAGGAGAATGGCTTCCTTGTTTTTACACATATTGAAAACAATGTATTTAAGTTCAAAATCCTTGAACTATCATCAATGTGTGAAATGATGAAGATAGTGGATGAAGAGGAAATTAATAATAATATGATGAATGTTGAGGCGGAGGAAGAAGAGGAAGACGAGGATCATGATGGCGATGACGCTGATGATGATGATGATGATTATACAATAGTAGAGGAAGAACATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGAGGATGTTGATGATGAGGAGGAGGAGGATGATGACGATGTGTGTATAATAATGAAAGAAAAAAAGAGTGAAGGAGTTGACAAGGGAACTAGTAGAAGCTGTGAACATGAACATTGTAGAACTTGCAAAGCATGGAGCATTGGGAGCAGTTCAGCAGCTACAAAATTTGAACATGGTGAAATTGATGTTGAAATGTATATTCAGCCAGGAAATCCACAATTCTTTGCAAAACATAATCCTTGCAGACCCAATGAATTGCATATTCCAGGAAAAGTTATTAAGGAGTTCAGTCTTTGCTTTACGAAACATATCACCCTTGTATGTTGCCACTGCAAGGATGTTCAAAGAAATGAAATAGCAGCTTATCATCACATCTTGCCACAAATGAGCACAAAACATATCCAAAAGAGAGGTGAAATAAGTACATGGAGAGATGGTCGTGTGGTTGTAAAAGGGTGGGAAGGTTTTTGTAAAAAGAGCAAGATAACAACAGAAAAAGATAGTTGCTTATGTGAAATTGTGTTGCGTGAAGATGGAACAATCGAAATGTTAAGGGTGCACGTTGTTAGGAAGAATTGTGCTGCGTGA 1104 0.3868 MTNIAKEFPDFLSVFHAEKHSERMLIPDAFVSLMLSKQKVLKNFILRDHRGRDWHVRTRPIGGKLYFNDGWKRFREENCLEENGFLVFTHIENNVFKFKILELSSMCEMMKIVDEEEINNNMMNVEAEEEEEDEDHDGDDADDDDDDYTIVEEEHDDDEEEEEEEEEEEEEDEDVDDEEEEDDDDVCIIMKEKKSEGVDKGTSRSCEHEHCRTCKAWSIGSSSAATKFEHGEIDVEMYIQPGNPQFFAKHNPCRPNELHIPGKVIKEFSLCFTKHITLVCCHCKDVQRNEIAAYHHILPQMSTKHIQKRGEISTWRDGRVVVKGWEGFCKKSKITTEKDSCLCEIVLREDGTIEMLRVHVVRKNCAA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01721 367 MobiDBLite consensus disorder prediction 127 186 - -
Trre2g01721 367 Pfam B3 DNA binding domain 16 100 IPR003340 GO:0003677
Trre2g01721 367 CDD B3_DNA 20 101 IPR003340 GO:0003677
Trre2g01721 367 PANTHER B3 DOMAIN-CONTAINING 7 349 - -
Trre2g01721 367 MobiDBLite consensus disorder prediction 127 187 - -
Trre2g01721 367 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Trre2g01721 367 Coils Coil 148 181 - -
Trre2g01721 367 SMART B3_2 11 104 IPR003340 GO:0003677
Trre2g01721 367 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Trre2g01721 367 Coils Coil 367 367 - -
Trre2g01721 367 Coils Coil 113 135 - -
Trre2g01721 367 Gene3D - 3 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01721 Trre-Chr2 13916756 13919123 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01721 8 367 B3 DNA Binding Superfamily AT3G06160 22.590 3.80e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01721 B3 2.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01721 - - mtr:120578114 424.476