Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01716 ATGACTAACACTCCCAAGGAGTTCCCTGACTTTTTCAAAGTCTTCCTTGCGGAAAAGCACACCGAGAGAATGCTTATCCCAATTGCTTTTGCGAAGCTAGTGCGTTTAAAAAGGAGGGTAATGAAGGATTTTATCCTCAGAGATCGTAGAGGAAGAGATTGGCTTGTCAAAGTGCGTCCTATTGGCGGTAAGCTTTATTTCGATGATGGCTGGAAGAGATTCGGGGAAGATAATTCTTTAGAGGAGAATGACTTCCTTGTTTTTACACATATTGAAAATAATGTATTCAAGTTCAAAGTCTTTGAACTATCATCAATGTGTGAAAAGATAAAGGTAATCGATGAGGAGGAAGAGAATAATATGATGGAGGATAAGGAGGAGGTGGATGACGATGACAGCAACAAAGAAGATGATGCTGATGATCATGATCATGATGATGGCGATGTTAATATGATGGCAGAGGAAGAAGAAGACAATGATGAAGGGGTGTACAAGGTATTTGGTAGAAGTGAACATCAACATTGTAGAACCTGCAAAGACTGGAGCATTGGGAGCAGTTCTGCAGTTCCAAAACTCGAAGACGATGAAATCGATGCTGAAATGTATATCCAGGAGGGAAATCCATTCTTCGTTGCAAAACATATGCATCGCAGATCCAATCAATTACATATTCCAAGAAGTGTAATTAAGGATTTCTGCTTTTGCTTTTCAAAGCATATCAACCTTGTATGTTGCCATTGCAAGGATGTTCAAACAAATGAAATAGCAGCCTATCATCATGTGTTGCCACAAATGAACACAAAACATATCGGTAAGAGAGGAGAAATATGTAATTGGAGGGACGGTCGAGTATTTGTGAAAGGGTGGACAGATTTTTGTACAATGAGCAATATCACCGAAAATGATCGATGTTTATGTGAGATTGTGTTGCGTGAAGACAAAACAATTGAAATGTTAATGGTACACATTGTTAATGTTGATCAGGAATGA 990 0.3879 MTNTPKEFPDFFKVFLAEKHTERMLIPIAFAKLVRLKRRVMKDFILRDRRGRDWLVKVRPIGGKLYFDDGWKRFGEDNSLEENDFLVFTHIENNVFKFKVFELSSMCEKIKVIDEEEENNMMEDKEEVDDDDSNKEDDADDHDHDDGDVNMMAEEEEDNDEGVYKVFGRSEHQHCRTCKDWSIGSSSAVPKLEDDEIDAEMYIQEGNPFFVAKHMHRRSNQLHIPRSVIKDFCFCFSKHINLVCCHCKDVQTNEIAAYHHVLPQMNTKHIGKRGEICNWRDGRVFVKGWTDFCTMSNITENDRCLCEIVLREDKTIEMLMVHIVNVDQE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01716 329 MobiDBLite consensus disorder prediction 114 149 - -
Trre2g01716 329 PANTHER B3 DOMAIN-CONTAINING 7 313 - -
Trre2g01716 329 Pfam B3 DNA binding domain 11 101 IPR003340 GO:0003677
Trre2g01716 329 Gene3D - 3 107 IPR015300 -
Trre2g01716 329 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Trre2g01716 329 SUPERFAMILY DNA-binding pseudobarrel domain 203 324 IPR015300 -
Trre2g01716 329 CDD B3_DNA 9 101 IPR003340 GO:0003677
Trre2g01716 329 MobiDBLite consensus disorder prediction 119 149 - -
Trre2g01716 329 SMART B3_2 11 104 IPR003340 GO:0003677
Trre2g01716 329 SUPERFAMILY DNA-binding pseudobarrel domain 7 103 IPR015300 -
Trre2g01716 329 Gene3D - 192 328 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01716 Trre-Chr2 13885562 13887029 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01716 8 323 B3 DNA Binding Superfamily AT3G06160 25.382 1.65e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01716 B3 2.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01716 - - mtr:120578114 414.461