Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01714 ATGTCAAGGCCAGTCAAGCTGTTAACTGAGATCCATAGTCGTAAAGAACTTTGGAAGATTGCTGTCAAGGTGAAAGACAAATGGAATGTATACAAGGATGGTAAACAGAGCTTCGAAGTTTTGGTTGTTGACGCCGAGGGAAATGACATTTTAGTCATAGTACCACCTGATTTAAATGCCAACTTTGATAAACAAATTGTTGAGAACAACAATTATTGCTTTGAAAACTTCCAAGTTCTCAAGAATGAAGATCAATTTAAGGTTTCACAAAATCAGTATAAATTGAGGTTCAATGGATCAACTTTGCTTTATGATGTTAATGTACACCAAATTCCAGACGCAACTACAAAGTTTAAGGACTTTGTTGAGATTCTCACTGGAAAATGGCGTGAAGATGTACTATATGATGTCATCGGAGTCTTAGATGAAATTGGATATTCACAAACTATGAAAGGAACCCGAAAAATTCAGGTCAATTTCAAACTCAGAGATCTTAGTGACAATAAGATCAGCTGTACTTTATGGGAAGACTATGCTATGAAGTTCATAACATATACTAGAGAAAAGTGTGATGCTGGACCTACTATCATTGTCATGAAGTATGCAAAGATCAAGCCAGAAGGCCAGTATCCGCTGACTGTTTCAAACACTTGGTCCACTACAAAACTTTTTATCAATGACGACATCAAAGAAATTGTTGAGTTCAAAAAAAGCTTAGAATTAGCTATTTCAGAGGGAACATTTGAGCCAATTGTTGATACACCGTCACAACTCATGTCGCAATATTCTGGAGGGTCGCAGTATACCCCGGAACAAAAATTCCTTCACAAATGTGAACTAATGCCACTTTCTAAAGTTGTCAATCTGACGATGGATAGTCAAGTTGTAAATGTTGTTGACACGGTTTGCGTCAAGACAAGCAAAAATGGTTGGTATTTTCAAGCTTGCTTTCATTGCCCCAAAGCAGCTGGTGGAGATAAGCCACCTTATAAGTGTGAAGGTGGTCATGAGACTGAAACCCAAATATGGAAGTACAGATTGGATATTGAGGTTGTCTATAACAACACTGAAAGTGTTTTCACATTTTGGGACCGCGAATGCACACAAATATTGGGAATATCCGCATCTGATCTTCGTGACAAAATGATTGCAATCGGTATAGCTGATCCACGCAATTATCCTGTTGATATCGACAAAATGGAGGGTCGAACATTAGCAGCTAGGATTAAGTGGCAGTTTAAATGGAAAAATGCATCTGTCAATCAAATTCATGAGGGAAAAGAGTTTATTGCTGATCTCAAATCACGTTTTTCATCTACTCAGGATTCAAAAAATGAGGATTCCAACAATGACAAAGCAACTGCTGAACCTACTCTTCAGGAGATAACCACTTCACAGTCTGTGGAAAACACGGAAGATGTTGTTATCCCTACGGTTTCTTTATCTGATGAGATTGACCCTGATCAACTTTCAATGATCACACCTTCTAAACGAACTGCCACTTCTATCAAACAAGAGATCATGGTTGAAGAAACTCAAGATCTGATTGGAAGTAAGATGTCTTCAACAAAAGCAGTCTTGAACAAGAACAAGAATAAGCATGCAAAAAAATAG 1614 0.3773 MSRPVKLLTEIHSRKELWKIAVKVKDKWNVYKDGKQSFEVLVVDAEGNDILVIVPPDLNANFDKQIVENNNYCFENFQVLKNEDQFKVSQNQYKLRFNGSTLLYDVNVHQIPDATTKFKDFVEILTGKWREDVLYDVIGVLDEIGYSQTMKGTRKIQVNFKLRDLSDNKISCTLWEDYAMKFITYTREKCDAGPTIIVMKYAKIKPEGQYPLTVSNTWSTTKLFINDDIKEIVEFKKSLELAISEGTFEPIVDTPSQLMSQYSGGSQYTPEQKFLHKCELMPLSKVVNLTMDSQVVNVVDTVCVKTSKNGWYFQACFHCPKAAGGDKPPYKCEGGHETETQIWKYRLDIEVVYNNTESVFTFWDRECTQILGISASDLRDKMIAIGIADPRNYPVDIDKMEGRTLAARIKWQFKWKNASVNQIHEGKEFIADLKSRFSSTQDSKNEDSNNDKATAEPTLQEITTSQSVENTEDVVIPTVSLSDEIDPDQLSMITPSKRTATSIKQEIMVEETQDLIGSKMSSTKAVLNKNKNKHAKK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01714 537 CDD RPA1_DBD_A_like 19 101 - -
Trre2g01714 537 Gene3D - 260 435 IPR012340 -
Trre2g01714 537 Gene3D - 3 104 IPR012340 -
Trre2g01714 537 CDD RPA1_DBD_B_like 136 239 - -
Trre2g01714 537 SUPERFAMILY Nucleic acid-binding proteins 304 417 IPR012340 -
Trre2g01714 537 SUPERFAMILY Nucleic acid-binding proteins 8 104 IPR012340 -
Trre2g01714 537 Gene3D - 110 248 IPR012340 -
Trre2g01714 537 MobiDBLite consensus disorder prediction 452 468 - -
Trre2g01714 537 SUPERFAMILY Nucleic acid-binding proteins 130 240 IPR012340 -
Trre2g01714 537 MobiDBLite consensus disorder prediction 438 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01714 Trre-Chr2 13868739 13871976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01714 1 380 Core DNA Replication Machinery Family AT5G08020 23.308 1.22e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01714 - - tpra:123887332 541.576