Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01709 ATGCTTATCCCAGTTGCTTTTGTGAAGCTAATGCATTCAAAAAATAAGGTAATTAAGGATTTTATCCTAAGAGATCATAGAGGAAGAGATTGGCATGTCAAAGCGGGTCGTATTGGCGACAAGCATTATTTTGAGGATGGTTGGAAGCGATTCAGAGAAGAAAACTCTTTAGAGGAAAATGACTTCCTTTTTTTTACACATATTGAAAATAATGTATTCAAGTTCAAAATCCTTGAATTCCCATCAATGTGTGAAAAGGTGAAGGTAATAGATGAGGAGGAAAACATTAATATGATGGAGAATCATGAAAAGGAGGATGGTGGTGATGGCAATGATGATGATGATGATGATAATGATGATGATAATGATGATGAAGATGATGATGATGTTGCTGATGATGATGAGGAAGACGATGATGAGTACATAATTAAAGAAGAAGAAGAAGAAGAGAATGAAGAAGTGTACAAGAAATGTAATATAAGTGAACCTCAACATTGTAGAAGCTGCAAAAATTGGGACATTGGAAGTAGTTCTGCAGGTTCAATACTTGAAGATGATGAAATTGATGCTGAAATGTATGTTCAAAAAGGAAATCCATACTTCATTGCAAAACCTCTTTATTACAGACCCAATGAATTGCACATTCCAAAGAATATTATTAAGGATTTCTGTCTTTGCTTAACAAAATACATCAACCTTGTATGTTGCAACTGCAAGGATATTCAAAACAATGACATAGGATACTATCATCATCACACACTGCCACAAATGAACACAAAGCATATCGAAAAGAGAGGAAAAGTACGTACATGGACAAACGGACGAATCTTGGTGCTAGGGTGGTTAGATCTTTGTAAAATGAGCAAGATCAGAGAAACTGATACATGCTTGTGTGAAATTGTGTTGCGTGACAATGAAGCAATAGAAATGATAAGGGTGCACGTCGTTAAGAAGGAATGA 960 0.3531 MLIPVAFVKLMHSKNKVIKDFILRDHRGRDWHVKAGRIGDKHYFEDGWKRFREENSLEENDFLFFTHIENNVFKFKILEFPSMCEKVKVIDEEENINMMENHEKEDGGDGNDDDDDDNDDDNDDEDDDDVADDDEEDDDEYIIKEEEEEENEEVYKKCNISEPQHCRSCKNWDIGSSSAGSILEDDEIDAEMYVQKGNPYFIAKPLYYRPNELHIPKNIIKDFCLCLTKYINLVCCNCKDIQNNDIGYYHHHTLPQMNTKHIEKRGKVRTWTNGRILVLGWLDLCKMSKIRETDTCLCEIVLRDNEAIEMIRVHVVKKE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01709 319 MobiDBLite consensus disorder prediction 101 138 - -
Trre2g01709 319 SUPERFAMILY DNA-binding pseudobarrel domain 1 79 IPR015300 -
Trre2g01709 319 MobiDBLite consensus disorder prediction 107 138 - -
Trre2g01709 319 PANTHER B3 DOMAIN-CONTAINING 3 305 - -
Trre2g01709 319 CDD B3_DNA 1 78 IPR003340 GO:0003677
Trre2g01709 319 ProSiteProfiles B3 DNA-binding domain profile. 1 81 IPR003340 GO:0003677
Trre2g01709 319 Gene3D - 1 84 IPR015300 -
Trre2g01709 319 Pfam B3 DNA binding domain 1 77 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01709 Trre-Chr2 13808483 13810275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01709 1 317 B3 DNA Binding Superfamily AT5G57720 23.077 1.54e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01709 B3 9.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01709 - - tpra:123900902 438.728