Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01708 ATGACTAACACTGCTAAGGAGTTCCCTGACTTTTTCAAAGTCTTCCTCATTGAGAAGCATTCTGATAGAATGCTTATCCCAGTTGCTTTTGTGAAGCTAATGCATTCAAAAAATAAGGTAATTAAGGATTTTATCCTAAGAGATCATAGAGGAAGAGATTGGCATGTCAAAGCGGGTCGTATTGGCGACAAGCATTATTTTGAGGATGGTTGGAAGCGATTCAGAGAAGAAAACTCTTTAGAGGAAAATGACTTCCTTTTTTTTACACATATTGAAAATAATGTATTCAAGTTCAAAATCCTTGAATTCCCATCAATGTGTGAAAAGGTGAAGGTAATAGATGAGGAGGAAAACATTAATATGATGGAGAATCATGAAAAGGAGGATGGTGGTGATGGCAATGATGATGATGATGATGATAATGATGATGATAATGATGATGAAGATGATGATGATGTTGCTGATGATGATGAGGAAGACGATGATGAGTACATAATTAAAGAAGAAGAAGAAGAAGAGAATGAAGAAGTGTACAAGAAATGTAATATAAGTGAACCTCAACATTGTAGAAGCTGCAAAAATTGGGACATTGGAAGTAGTTCTGCAGGTTCAATACTTGAAGATGATGAAATTGATGCTGAAATGTATGTTCAAAAAGGAAATCCATACTTCATTGCAAAACCTCTTTATTACAGACCCAATGAATTGCACATTCCAAAGAATATTATTAAGGATTTCTGTCTTTGCTTAACAAAATACATCAACCTTGTATGTTGCAACTGCAAGGATATTCAAAACAATGACATAGGATACTATCATCATCACACACTGCCACAAATGAACACAAAGCATATCGAAAAGAGAGGAAAAGTACGTACATGGACAAACGGACGAATCTTGGTGCTAGGGTGGTTAGATCTTTGTAAAATGAGCAAGATCAGAGAAACTGATACATGCTTGTGTGAAATTGTGTTGCGTGACAATGAAGCAATAGAAATGATAAGGGTGCACGTCGTTAAGAAGGAATGA 1029 0.3557 MTNTAKEFPDFFKVFLIEKHSDRMLIPVAFVKLMHSKNKVIKDFILRDHRGRDWHVKAGRIGDKHYFEDGWKRFREENSLEENDFLFFTHIENNVFKFKILEFPSMCEKVKVIDEEENINMMENHEKEDGGDGNDDDDDDNDDDNDDEDDDDVADDDEEDDDEYIIKEEEEEENEEVYKKCNISEPQHCRSCKNWDIGSSSAGSILEDDEIDAEMYVQKGNPYFIAKPLYYRPNELHIPKNIIKDFCLCLTKYINLVCCNCKDIQNNDIGYYHHHTLPQMNTKHIEKRGKVRTWTNGRILVLGWLDLCKMSKIRETDTCLCEIVLRDNEAIEMIRVHVVKKE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01708 342 MobiDBLite consensus disorder prediction 130 161 - -
Trre2g01708 342 MobiDBLite consensus disorder prediction 124 161 - -
Trre2g01708 342 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Trre2g01708 342 PANTHER B3 DOMAIN-CONTAINING 7 328 - -
Trre2g01708 342 SMART B3_2 11 104 IPR003340 GO:0003677
Trre2g01708 342 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Trre2g01708 342 CDD B3_DNA 9 101 IPR003340 GO:0003677
Trre2g01708 342 Gene3D - 2 107 IPR015300 -
Trre2g01708 342 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01708 Trre-Chr2 13808483 13810344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01708 8 340 B3 DNA Binding Superfamily AT3G06160 22.353 1.04e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01708 B3 1.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01708 - - tpra:123900902 483.796