Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01704 ATGTCCGAGAGAATTTTCATTGGAAACGATGAGGATAGTAACATCAAGCTTAAAATTGAGGATGAGTCAGAGCCAAGATCCGCGAAGGAACTAAAGGAAATTCCACCAACCTTTGATTCCAATAAGGATTTACTTCCTCAGAGGCATGCCATTCCCACCAAGTCAACTATCAAATCCTCAGAGATCGGTGAACATTCAAGTTCATCTCAAAATGCTACTATTGAACTTTTATCTCATAACACTACTAATGAGCCTTTACCCAAGAATGTTACCAATGAACCTTTACTTGAGAAGGAAGTGAGAAAATTCATTTGTCAATACTGTGACAAGAAATTCTCCAGTTATCAATCACTTGGAGGACACAAAACCGTTCACAGACATCAGCATGCCTTAAAAAAAGAGGAAGGAAAAAGGAGAATGATGGAGGAAATGAATTCAACCCTAAGGTTTACACTACAAAAAAGGTGA 468 0.3803 MSERIFIGNDEDSNIKLKIEDESEPRSAKELKEIPPTFDSNKDLLPQRHAIPTKSTIKSSEIGEHSSSSQNATIELLSHNTTNEPLPKNVTNEPLLEKEVRKFICQYCDKKFSSYQSLGGHKTVHRHQHALKKEEGKRRMMEEMNSTLRFTLQKR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01704 155 Gene3D Classic Zinc Finger 88 154 - -
Trre2g01704 155 MobiDBLite consensus disorder prediction 21 37 - -
Trre2g01704 155 ProSitePatterns Zinc finger C2H2 type domain signature. 105 127 IPR013087 -
Trre2g01704 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Trre2g01704 155 PANTHER ZINC FINGER PROTEIN JAGGED 65 142 IPR045320 GO:0003700
Trre2g01704 155 SUPERFAMILY beta-beta-alpha zinc fingers 95 144 IPR036236 -
Trre2g01704 155 MobiDBLite consensus disorder prediction 52 89 - -
Trre2g01704 155 MobiDBLite consensus disorder prediction 21 93 - -
Trre2g01704 155 Pfam C2H2-type zinc finger 103 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01704 Trre-Chr2 13788252 13788719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01704 17 126 C2H2 Transcription Factor Family AT1G27730 33.898 7.29e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g01704 zf-C2H2_6 3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01704 - - tpra:123891784 127.487