Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01684 ATGTACTATCGTGGAGTTATGGCAGGCCAAATTGGTCATGGTATCATGGAGGAAGAAATATGGAGGAAAGGACCTTGGACTGCTGAAGAGGATAGGTTGCTTATTGAGTATGTTAGGGTGCATGGTGAAGGGAGGTGGAATTCTGTTGCTAGACTTGCAGGATTGAGAAGGAATGGAAAGAGTTGCAGATTGAGATGGGTGAATTATCTAAGGCCAGATCTCAAAAGGGGTCAAATCACACCACAAGAAGAGACCATAATTCTTGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAACTTACCAGGAAGAACGGACAACGAGATAAAGAACTACTGGAGAACTCATTTTAAGAAAAAGGCAAAAAATCCTTCTGATGCCGCCGAAAAGGCGAAAAATCGATTCATGAGGAAGCAACTATTTCACCAGCAACAACAACAGTTGCAACAAGTTCAACAGCAGCAACAACAACTGCAATTCAACTTGGACATGAAAGATGTCATGTCCTTGTTTGAGGAAAATAATAATAACCATAGAGTTCCTTATATATCTCAAGCTAGACAAGAAATTTTCAGCATGTGTCCAAACACAACAGAAGAACAGAGTTACTTTATGTTTAATGGAAACTCTTCTGTACAAGATTCTTCAGCAGATGATGTTTTGTGGGATGATGGACTGTGGAATTTGGATGATGTTCATGGAAATTTCAGTGTTGCTAATGCAACAAACAAAACTGGTTTATATAATTTAATTGCTCCTAATTATTGTTAG 783 0.3934 MYYRGVMAGQIGHGIMEEEIWRKGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLRRNGKSCRLRWVNYLRPDLKRGQITPQEETIILELHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKKAKNPSDAAEKAKNRFMRKQLFHQQQQQLQQVQQQQQQLQFNLDMKDVMSLFEENNNNHRVPYISQARQEIFSMCPNTTEEQSYFMFNGNSSVQDSSADDVLWDDGLWNLDDVHGNFSVANATNKTGLYNLIAPNYC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01684 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 70 IPR017930 -
Trre2g01684 260 Coils Coil 145 165 - -
Trre2g01684 260 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Trre2g01684 260 FunFam Myb transcription factor 23 75 - -
Trre2g01684 260 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Trre2g01684 260 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Trre2g01684 260 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Trre2g01684 260 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Trre2g01684 260 CDD SANT 80 121 IPR001005 -
Trre2g01684 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Trre2g01684 260 SMART sant 22 72 IPR001005 -
Trre2g01684 260 SMART sant 75 123 IPR001005 -
Trre2g01684 260 Gene3D - 80 124 - -
Trre2g01684 260 FunFam MYB-related transcription factor 79 125 - -
Trre2g01684 260 Gene3D - 23 75 - -
Trre2g01684 260 CDD SANT 25 70 IPR001005 -
Trre2g01684 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 205 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01684 Trre-Chr2 13655639 13657274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01684 16 260 MYB Transcription Factor Family AT4G13480 55.224 3.42e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g01684 Myb_DNA-binding 3.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01684 K09422 - gmx:100795981 394.43