Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01681 | ATGGCTACTGCTGCTGCAGGCATAGCCTCATTGTTTTCATCTTCCATCAACACTGTCAAATGTCTCCGTTCCAAAAACTGCATGTTTGCACCATCTTCTTTGTCACAATCCTTCTATTCTTACTCACTTGAACCTTTATCCATTGGCACAACAATCTCATCACATAAGCTATGGATGCCTAGAATTACTGCTGCTGTTGCACAGGAAGAAGCTATTGTGGCTGCTGCTGAAGAGGAGACTGTGGTGGAGGAAGAGAAAGAAGGACAAGAAGAAGTGAAGGAGAGTGGAGGGGAAATTGTGGATACTAGGACTAAGCTTTATTTTGGTAATTTACCTTATGGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAAGATTATGGTAGTGCAGAACTAATTGAGGTTCTTTATGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCAGTGATCAAAAATCTTGATGGAAAAGAGTTCATGGGACGAACCTTGCGAGTGAACTTCTCGGACAAACCGAAACCAAAAGAACCATTGTACCCTGAAACTGAGTACAAACTTTTTGTTGGGAACTTGTCTTGGAATGTAACTTCTGAGATTCTTACACAAGCCTTTCAAGAACATGGAACTGTTGTTGGAGCTAGGGTGTTATATGATGGCGAAACTGGAAGGTCCCGTGGATATGGCTTTGTTTCCTATGCCAATAAATCAGAAATGGAAGCTGCCCTTACAGTCATGGATAATGTGGAACTAGAAGGACGACCATTGCGTGTAAGCTTGGCTCAAGGAAAACGTTCGTAA | 831 | 0.4176 | MATAAAGIASLFSSSINTVKCLRSKNCMFAPSSLSQSFYSYSLEPLSIGTTISSHKLWMPRITAAVAQEEAIVAAAEEETVVEEEKEGQEEVKESGGEIVDTRTKLYFGNLPYGVDSAQLAGLIEDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIKNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLSWNVTSEILTQAFQEHGTVVGARVLYDGETGRSRGYGFVSYANKSEMEAALTVMDNVELEGRPLRVSLAQGKRS | 276 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01681 | 276 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 104 | 182 | IPR000504 | GO:0003723 | |
Trre2g01681 | 276 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 197 | 267 | IPR000504 | GO:0003723 | |
Trre2g01681 | 276 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 106 | 176 | IPR000504 | GO:0003723 | |
Trre2g01681 | 276 | Gene3D | - | 65 | 184 | IPR012677 | - | |
Trre2g01681 | 276 | Gene3D | - | 185 | 276 | IPR012677 | - | |
Trre2g01681 | 276 | PANTHER | OS02G0815200 PROTEIN | 41 | 275 | - | - | |
Trre2g01681 | 276 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 195 | 273 | IPR000504 | GO:0003723 | |
Trre2g01681 | 276 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 67 | 185 | - | - | |
Trre2g01681 | 276 | SMART | rrm1_1 | 196 | 269 | IPR000504 | GO:0003723 | |
Trre2g01681 | 276 | SMART | rrm1_1 | 105 | 178 | IPR000504 | GO:0003723 | |
Trre2g01681 | 276 | FunFam | 28 kDa ribonucleoprotein, chloroplastic | 186 | 276 | - | - | |
Trre2g01681 | 276 | SUPERFAMILY | RNA-binding domain, RBD | 188 | 275 | IPR035979 | GO:0003676 | |
Trre2g01681 | 276 | CDD | RRM2_NsCP33_like | 196 | 271 | - | - | |
Trre2g01681 | 276 | SUPERFAMILY | RNA-binding domain, RBD | 99 | 187 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01681 | Trre-Chr2 | 13628374 | 13630402 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01681 | 104 | 274 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 32.973 | 5.29e-16 | 75.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01681 | - | - | gmx:100820203 | 374.4 |