Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01681 ATGGCTACTGCTGCTGCAGGCATAGCCTCATTGTTTTCATCTTCCATCAACACTGTCAAATGTCTCCGTTCCAAAAACTGCATGTTTGCACCATCTTCTTTGTCACAATCCTTCTATTCTTACTCACTTGAACCTTTATCCATTGGCACAACAATCTCATCACATAAGCTATGGATGCCTAGAATTACTGCTGCTGTTGCACAGGAAGAAGCTATTGTGGCTGCTGCTGAAGAGGAGACTGTGGTGGAGGAAGAGAAAGAAGGACAAGAAGAAGTGAAGGAGAGTGGAGGGGAAATTGTGGATACTAGGACTAAGCTTTATTTTGGTAATTTACCTTATGGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAAGATTATGGTAGTGCAGAACTAATTGAGGTTCTTTATGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCAGTGATCAAAAATCTTGATGGAAAAGAGTTCATGGGACGAACCTTGCGAGTGAACTTCTCGGACAAACCGAAACCAAAAGAACCATTGTACCCTGAAACTGAGTACAAACTTTTTGTTGGGAACTTGTCTTGGAATGTAACTTCTGAGATTCTTACACAAGCCTTTCAAGAACATGGAACTGTTGTTGGAGCTAGGGTGTTATATGATGGCGAAACTGGAAGGTCCCGTGGATATGGCTTTGTTTCCTATGCCAATAAATCAGAAATGGAAGCTGCCCTTACAGTCATGGATAATGTGGAACTAGAAGGACGACCATTGCGTGTAAGCTTGGCTCAAGGAAAACGTTCGTAA 831 0.4176 MATAAAGIASLFSSSINTVKCLRSKNCMFAPSSLSQSFYSYSLEPLSIGTTISSHKLWMPRITAAVAQEEAIVAAAEEETVVEEEKEGQEEVKESGGEIVDTRTKLYFGNLPYGVDSAQLAGLIEDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIKNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLSWNVTSEILTQAFQEHGTVVGARVLYDGETGRSRGYGFVSYANKSEMEAALTVMDNVELEGRPLRVSLAQGKRS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01681 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Trre2g01681 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 267 IPR000504 GO:0003723
Trre2g01681 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Trre2g01681 276 Gene3D - 65 184 IPR012677 -
Trre2g01681 276 Gene3D - 185 276 IPR012677 -
Trre2g01681 276 PANTHER OS02G0815200 PROTEIN 41 275 - -
Trre2g01681 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Trre2g01681 276 FunFam 31 kDa ribonucleoprotein, chloroplastic 67 185 - -
Trre2g01681 276 SMART rrm1_1 196 269 IPR000504 GO:0003723
Trre2g01681 276 SMART rrm1_1 105 178 IPR000504 GO:0003723
Trre2g01681 276 FunFam 28 kDa ribonucleoprotein, chloroplastic 186 276 - -
Trre2g01681 276 SUPERFAMILY RNA-binding domain, RBD 188 275 IPR035979 GO:0003676
Trre2g01681 276 CDD RRM2_NsCP33_like 196 271 - -
Trre2g01681 276 SUPERFAMILY RNA-binding domain, RBD 99 187 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01681 Trre-Chr2 13628374 13630402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01681 104 274 Eukaryotic Initiation Factors Gene Family AT2G23350 32.973 5.29e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01681 - - gmx:100820203 374.4