LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g01675	ATGGCTTCCGCCGCCGCCAGACCCCTTGTCACCGTCCAGGCACTCGATTCTGATATGGCAACCGATTCCCCAACCACCCTACCCATTCCTGACGTAATGAGAGCCTCAATTCGTCCCGATATCGTCAATTTTGTCCACTCCAACATCTCCAAAAATGCTCGTCAACCCTACGCCGTCAGCCGCCGTGCCGGACACCAAACCTCCGCCGAATCATGGGGAACAGGTCGCGCTGTCTCCCGTATCCCTCGTGTTTCCGGAGGTGGAACTCACCGTGCAGGACAAGCAGCCTTCGGAAACATGTGTCGCGGTGGTCGGATGTTTGCTCCGACGAGAATCTGGCGCCGCTGGCACCTTCCTTCACTTGTTCTCGCTCGTGGCCATAGGATCGAAGCTGTTCCTGAATTTCCACTTGTTGTTGGTGATTCTGCTGAAGGAGTTGAGAAAACAAAGGAAGCAATCAAGGTTTTGAAGAAGATTGGAGCTTTTCCTGATGCTGAGAAAGCGAAAGATAGCCACGGAATTCGTCCTGGCAAAGGTAAAATGCGTAACCGTCGCTATATATCTCGTAAAGGACCGTTGATTGTTTATGGTACCGATGGAGCAAAAGCTGTTAAAGCTTTTAGGAATATACCTGGTGTTGAAATTACAAATGTTGAAAGACTCAATCTTTTGAAGCTTGCACCTGGTGGACATTTAGGTAGATTTGTTGTTTGGACCAAATCTGCATTTGAGAAACTCGATTCGATTTACGGGTCTTTTGATAAGGGTAGTGAGAAGAAAAAGGGGTATGTTTTACCTAGGGCAAAGATGGTTAATTCTGATTTGACTAGGATTATTAATTCTGATGAGGTTCAATCTGTTGTGAGACCTGTTAAGAAGGATGTTAAGCGCGCCACACTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGACTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTACTTGCTGAGGCTGAAAGGGTTAAGGCTAAGAAGGAGAAGCTTGATAAGAAGAGGAAGACTGTTTCTAAGGAGGAAGCCTCTGCCATTAAGGCTGCAGGAAAAGCATGGTACAACACCATGGTCTCTGATTCTGATTACGCCGAATTTGACAACTTCTCCAAGTGGTTGGGTGTTTCACAGTGA	1161	0.4634	MASAAARPLVTVQALDSDMATDSPTTLPIPDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHLPSLVLARGHRIEAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTDGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKGSEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPVKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYAEFDNFSKWLGVSQ	386

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g01675	386	MobiDBLite	consensus disorder prediction	56	74	-	-
	Trre2g01675	386	Pfam	60S ribosomal protein L4 C-terminal domain	261	333	IPR025755	-
	Trre2g01675	386	Gene3D	-	4	289	IPR023574	GO:0003735\|GO:0005840\|GO:0006412
	Trre2g01675	386	SUPERFAMILY	Ribosomal protein L4	24	248	IPR023574	GO:0003735\|GO:0005840\|GO:0006412
	Trre2g01675	386	Coils	Coil	323	350	-	-
	Trre2g01675	386	MobiDBLite	consensus disorder prediction	56	75	-	-
	Trre2g01675	386	Pfam	Ribosomal protein L4/L1 family	29	247	IPR002136	GO:0003735\|GO:0005840\|GO:0006412
	Trre2g01675	386	PANTHER	60S RIBOSOMAL PROTEIN L4	5	379	IPR045240	-

Showing 1 to 8 of 8 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g01675	Trre-Chr2	13601036	13604475	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g01675	1	386	Cytoplasmic Ribosomal Protein Gene Family	AT3G09630	78.079	0.0	636

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g01675	K02930		-	gmx:100779764	684.485

Showing 1 to 1 of 1 entries