Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01675 ATGGCTTCCGCCGCCGCCAGACCCCTTGTCACCGTCCAGGCACTCGATTCTGATATGGCAACCGATTCCCCAACCACCCTACCCATTCCTGACGTAATGAGAGCCTCAATTCGTCCCGATATCGTCAATTTTGTCCACTCCAACATCTCCAAAAATGCTCGTCAACCCTACGCCGTCAGCCGCCGTGCCGGACACCAAACCTCCGCCGAATCATGGGGAACAGGTCGCGCTGTCTCCCGTATCCCTCGTGTTTCCGGAGGTGGAACTCACCGTGCAGGACAAGCAGCCTTCGGAAACATGTGTCGCGGTGGTCGGATGTTTGCTCCGACGAGAATCTGGCGCCGCTGGCACCTTCCTTCACTTGTTCTCGCTCGTGGCCATAGGATCGAAGCTGTTCCTGAATTTCCACTTGTTGTTGGTGATTCTGCTGAAGGAGTTGAGAAAACAAAGGAAGCAATCAAGGTTTTGAAGAAGATTGGAGCTTTTCCTGATGCTGAGAAAGCGAAAGATAGCCACGGAATTCGTCCTGGCAAAGGTAAAATGCGTAACCGTCGCTATATATCTCGTAAAGGACCGTTGATTGTTTATGGTACCGATGGAGCAAAAGCTGTTAAAGCTTTTAGGAATATACCTGGTGTTGAAATTACAAATGTTGAAAGACTCAATCTTTTGAAGCTTGCACCTGGTGGACATTTAGGTAGATTTGTTGTTTGGACCAAATCTGCATTTGAGAAACTCGATTCGATTTACGGGTCTTTTGATAAGGGTAGTGAGAAGAAAAAGGGGTATGTTTTACCTAGGGCAAAGATGGTTAATTCTGATTTGACTAGGATTATTAATTCTGATGAGGTTCAATCTGTTGTGAGACCTGTTAAGAAGGATGTTAAGCGCGCCACACTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGACTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTACTTGCTGAGGCTGAAAGGGTTAAGGCTAAGAAGGAGAAGCTTGATAAGAAGAGGAAGACTGTTTCTAAGGAGGAAGCCTCTGCCATTAAGGCTGCAGGAAAAGCATGGTACAACACCATGGTCTCTGATTCTGATTACGCCGAATTTGACAACTTCTCCAAGTGGTTGGGTGTTTCACAGTGA 1161 0.4634 MASAAARPLVTVQALDSDMATDSPTTLPIPDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHLPSLVLARGHRIEAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTDGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKGSEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPVKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYAEFDNFSKWLGVSQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01675 386 MobiDBLite consensus disorder prediction 56 74 - -
Trre2g01675 386 Pfam 60S ribosomal protein L4 C-terminal domain 261 333 IPR025755 -
Trre2g01675 386 Gene3D - 4 289 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre2g01675 386 SUPERFAMILY Ribosomal protein L4 24 248 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre2g01675 386 Coils Coil 323 350 - -
Trre2g01675 386 MobiDBLite consensus disorder prediction 56 75 - -
Trre2g01675 386 Pfam Ribosomal protein L4/L1 family 29 247 IPR002136 GO:0003735|GO:0005840|GO:0006412
Trre2g01675 386 PANTHER 60S RIBOSOMAL PROTEIN L4 5 379 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01675 Trre-Chr2 13601036 13604475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01675 1 386 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 78.079 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01675 K02930 - gmx:100779764 684.485