Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g01669 | ATGAACTGCTCCATTTCCGGTGAGGTTCCGGAAGAGCCCGTGGTGTCAAGAGGCTCCGGTCTTCTCTTTGAGAAGAGGTTAATCGAGAGACATATTGCGGATTATGGGAAGTGTCCAGTTACTGGAGAACCACTTACTTTGGATGACATTGTACCAATCAAAACAGGAAAGATAGTGAAGCCTAGACCAGTACAGGCAGCTAGCATCCCTGGCATGCTCGGAATGTTCCAAAATGAATGGGATGGGTTGATGTTATCTAGTTTTGCATTGGAGCAGCAATTACATACAGCAAGGCAAGAGTTAAGTCATGCTTTATATCAGCATGATGCTGCTTGCCGTGTGATTGCACGACTTAAAAAGGAACGAGATGAAGCTAGGTCTTTACTTGCACAGGCAGATAGGCAGTTCCCTACACCAAATGATGCGACAGCAAATGATCCTGTTCATAGCAATGGGAAAAGAGCTGCTGACGATGAGGAGTTGGCACCTAATGCGAAGAAATTACATCCTGGAATTTCTTCTAGCATAATTTCTGAGCTAACAGACTGTAATGCTGCTCTTTCACAGCAGAGGAAAAAGCGACAGATTCCTGCGACTTTGGCTCCTATTGATGCTATAGAGACATATACCCAGATATCTAGTCATCCCTTAAACAAAACAAACAGACAAGGCATTATATCTCTGGATATCCTTTATTCTAAGGACTTGATTGCAACCGGAAATATTGATACAAATGCTGTTATCTTTGACCGTCCATCAGGACAAGTATTAGCTACACTCAGTGGTCACTCTAAAAAGGTAACCAGCGTGAAGTTTGTAGGTCAGGGCGAATCTATCATAACTGGTTCAGCAGATAAGACTGTTCGTTTGTGGCAAGGGTCAGATGATGGTAGCTATACCTGCAGACAGACCTTGAAGGATCATTCGGCTGAGGTGCAAGCTGTTACTGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGATGGCACTTGGTGCTTTTATGAACTGTCTTCAGGGACTTGTCTGACTCAGGTTTCAGACTTGTCCGAAGGCTATACATCAGCAGCTTTTCATCCTGATGGTCTTATCCTTGGAACTGGCACCATGGATTCTGTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTGGCTAAATTTGATGGACATAAGGGGCATGTGACTGCGATATCCTTTTCTGAGAATGGTTACTACCTTGCGACTGCAGCTCATGACGGTGTAAAGCTTTGGGATCTACGAAAGTTGAAAAACTTCCGGAATTTTGCCCCATATGACGAAGAAACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGATCCTACCTTGCAGTTGGAGGCTCGGATGTAAGGATATACCAAGTTGCAAATGTGAAATCTGAATGGAACTTAATCAAAACTTTTCCAGATTTATCTGGAACAGGTAAATCCACATGTGTAAAATTTGGCCCAGATTCAAAATACTTAGCAGTTGCATCAATGGACCGGAATCTTAGAATATTCGGCGAGCCTGGTGAAGGTATACCTGCGGAATCTTAG | 1563 | 0.4338 | MNCSISGEVPEEPVVSRGSGLLFEKRLIERHIADYGKCPVTGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQADRQFPTPNDATANDPVHSNGKRAADDEELAPNAKKLHPGISSSIISELTDCNAALSQQRKKRQIPATLAPIDAIETYTQISSHPLNKTNRQGIISLDILYSKDLIATGNIDTNAVIFDRPSGQVLATLSGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGSYTCRQTLKDHSAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDLSEGYTSAAFHPDGLILGTGTMDSVVKIWDVKSQANVAKFDGHKGHVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRNFAPYDEETPTNSVEFDHSGSYLAVGGSDVRIYQVANVKSEWNLIKTFPDLSGTGKSTCVKFGPDSKYLAVASMDRNLRIFGEPGEGIPAES | 520 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g01669 | 520 | Pfam | WD domain, G-beta repeat | 254 | 291 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | Pfam | WD domain, G-beta repeat | 481 | 509 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | Pfam | WD domain, G-beta repeat | 351 | 379 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | Pfam | WD domain, G-beta repeat | 385 | 420 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 347 | 388 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | ProSiteProfiles | U-box domain profile. | 1 | 70 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre2g01669 | 520 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | IPR013083 | - | |
| Trre2g01669 | 520 | MobiDBLite | consensus disorder prediction | 133 | 147 | - | - | |
| Trre2g01669 | 520 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 260 | 292 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 366 | 380 | IPR019775 | - | |
| Trre2g01669 | 520 | SMART | WD40_4 | 382 | 420 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | SMART | WD40_4 | 298 | 337 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | SMART | WD40_4 | 340 | 379 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | SMART | WD40_4 | 253 | 292 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | SMART | WD40_4 | 423 | 462 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | SMART | WD40_4 | 210 | 250 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | SMART | WD40_4 | 469 | 510 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 389 | 429 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | SUPERFAMILY | RING/U-box | 1 | 53 | - | - | |
| Trre2g01669 | 520 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 305 | 346 | IPR001680 | GO:0005515 | |
| Trre2g01669 | 520 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 260 | 292 | - | - | |
| Trre2g01669 | 520 | Coils | Coil | 115 | 135 | - | - | |
| Trre2g01669 | 520 | Gene3D | - | 200 | 510 | IPR015943 | GO:0005515 | |
| Trre2g01669 | 520 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 347 | 382 | - | - | |
| Trre2g01669 | 520 | Pfam | Prp19/Pso4-like | 66 | 131 | IPR013915 | - | |
| Trre2g01669 | 520 | CDD | RING-Ubox_PRP19 | 1 | 54 | - | - | |
| Trre2g01669 | 520 | FunFam | Pre-mRNA-processing factor 19, putative | 1 | 58 | - | - | |
| Trre2g01669 | 520 | SUPERFAMILY | WD40 repeat-like | 220 | 509 | IPR036322 | GO:0005515 | |
| Trre2g01669 | 520 | CDD | WD40 | 222 | 509 | - | - | |
| Trre2g01669 | 520 | MobiDBLite | consensus disorder prediction | 130 | 162 | - | - | |
| Trre2g01669 | 520 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 510 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Trre2g01669 | 520 | SMART | Ubox_2 | 1 | 66 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre2g01669 | 520 | FunFam | pre-mRNA-processing factor 19 | 197 | 511 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g01669 | Trre-Chr2 | 13550082 | 13557712 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g01669 | 1 | 512 | U-box Gene Family | AT1G04510 | 74.175 | 0.0 | 805 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g01669 | K10599 | - | gmx:100527039 | 937.562 |