Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01668 ATGTTACTTACATTGTTTATATGTCACACATTGCAGGATGAAATTTCAAGTCCAAATATTAGTGCACAAATTTTTGAACTTTGTGACACCGATTTGTTCCAAGACTCGCTTCAACAAAATTCCGATGTTACTTCGAGCTCAAATTGTTGTCAAGACGAAAACAACATCAACAACAACAACAACAATAATAATTCCTCGTATACAACCTTAAACAACATATCACAAGCTTTAGATTTAGAAAACAATAACATCAACAACAATAACAATAGCAATAGTAATAGTACCGCTACAACAACGAGCACCACAAGCACTACAAACACGAACAACATTACGAATAATACCAATAATAACCTTTCAATCATCTTCGATTCTCAAGAAGAAATCGACAATGACATATCGGCTTCCATAGACTTCACATCATCGTCATCTTTTCTTGTTCCGACCCTTCTTCCAATCAATACAACTCATCAAGAACAATTTGATTTTTCTTCAACACAACCTCATCATAATCTTGAACTATCAACTTGTTCTGTTTTGAAAGGGCTATCTTCTCAATATCAAACTGATATTAGTCCGGTTTCGGCACCAGCGCAGCTTATCGGTGCTGCTTCGTTTCCATCTATGTTTGAAGATGATTGCATATCTTCAATTCCTTCTTGTAATCCTTATCTTAGTAATGGTTTAGGTTTGTATATGCCTCAAGGAAATCTAAACACTGCTTTATCTGCTGATAGTTCTAGCTTATTTGGTGGAGGAATTCTATTAGGTTCCGAAATGCAGACTCAAGATTTGGATTATCAAGGTGAAAATGGTGGAATTTATTGTACAGATTCTGTTCAACAAGTTTTTAATCCTCAAGATTTTCAGGCACTTGGTACTGAAAATCACAAACTAGTATCTGGGGCTGGTTCTGCCAATTTGGCACCAGAAATCTCACACTTGGAGGACTCTAGTTTGAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATATATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATTAAGTATGCTTGTCGAAAAACTTTAGCGGATAGCCGACCGCGAGTTAGAGGAAGGTTTGCAAAAAATGATGATTTTGGAGAGAATCAAAGAGCAGCTAGTAGCAACCATGAAGATGATGATGAAATAGTTGTTAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGACTTAATTCCTTCAAATGCAACTATTCCATCCAATCCTTGATTTGA 1278 0.3568 MLLTLFICHTLQDEISSPNISAQIFELCDTDLFQDSLQQNSDVTSSSNCCQDENNINNNNNNNNSSYTTLNNISQALDLENNNINNNNNSNSNSTATTTSTTSTTNTNNITNNTNNNLSIIFDSQEEIDNDISASIDFTSSSSFLVPTLLPINTTHQEQFDFSSTQPHHNLELSTCSVLKGLSSQYQTDISPVSAPAQLIGAASFPSMFEDDCISSIPSCNPYLSNGLGLYMPQGNLNTALSADSSSLFGGGILLGSEMQTQDLDYQGENGGIYCTDSVQQVFNPQDFQALGTENHKLVSGAGSANLAPEISHLEDSSLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENQRAASSNHEDDDEIVVKEEDDMVDSSDIFAHISGLNSFKCNYSIQSLI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01668 425 MobiDBLite consensus disorder prediction 367 389 - -
Trre2g01668 425 ProSiteProfiles CCT domain profile. 329 371 IPR010402 GO:0005515
Trre2g01668 425 MobiDBLite consensus disorder prediction 80 115 - -
Trre2g01668 425 Pfam CCT motif 329 371 IPR010402 GO:0005515
Trre2g01668 425 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 37 386 IPR045281 GO:0009909
Trre2g01668 425 MobiDBLite consensus disorder prediction 367 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01668 Trre-Chr2 13519552 13522048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01668 308 377 C2C2-CO-like Transcription Factor Family AT5G24930 38.571 2.91e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g01668 CCT 5.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01668 - - gmx:100807304 466.463