Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01667 ATGTTGCAAGATGTTATCCACCCTCCATCACATGATGATCAACTATCCATTGATGAAATTTCAAGTCCAAATATTAGTGCACAAATTTTTGAACTTTGTGACACCGATTTGTTCCAAGACTCGCTTCAACAAAATTCCGATGTTACTTCGAGCTCAAATTGTTGTCAAGACGAAAACAACATCAACAACAACAACAACAATAATAATTCCTCGTATACAACCTTAAACAACATATCACAAGCTTTAGATTTAGAAAACAATAACATCAACAACAATAACAATAGCAATAGTAATAGTACCGCTACAACAACGAGCACCACAAGCACTACAAACACGAACAACATTACGAATAATACCAATAATAACCTTTCAATCATCTTCGATTCTCAAGAAGAAATCGACAATGACATATCGGCTTCCATAGACTTCACATCATCGTCATCTTTTCTTGTTCCGACCCTTCTTCCAATCAATACAACTCATCAAGAACAATTTGATTTTTCTTCAACACAACCTCATCATAATCTTGAACTATCAACTTGTTCTGTTTTGAAAGGGCTATCTTCTCAATATCAAACTGATATTAGTCCGGTTTCGGCACCAGCGCAGCTTATCGGTGCTGCTTCGTTTCCATCTATGTTTGAAGATGATTGCATATCTTCAATTCCTTCTTGTAATCCTTATCTTAGTAATGGTTTAGGTTTGTATATGCCTCAAGGAAATCTAAACACTGCTTTATCTGCTGATAGTTCTAGCTTATTTGGTGGAGGAATTCTATTAGGTTCCGAAATGCAGACTCAAGATTTGGATTATCAAGGTGAAAATGGTGGAATTTATTGTACAGATTCTGTTCAACAAGTTTTTAATCCTCAAGATTTTCAGGCACTTGGTACTGAAAATCACAAACTAGTATCTGGGGCTGGTTCTGCCAATTTGGCACCAGAAATCTCACACTTGGAGGACTCTAGTTTGAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATATATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATTAAGTATGCTTGTCGAAAAACTTTAGCGGATAGCCGACCGCGAGTTAGAGGAAGGTTTGCAAAAAATGATGATTTTGGAGAGAATCAAAGAGCAGCTAGTAGCAACCATGAAGATGATGATGAAATAGTTGTTAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGACTTAATTCCTTCAAATGCAACTATTCCATCCAATCCTTGATTTGA 1293 0.3596 MLQDVIHPPSHDDQLSIDEISSPNISAQIFELCDTDLFQDSLQQNSDVTSSSNCCQDENNINNNNNNNNSSYTTLNNISQALDLENNNINNNNNSNSNSTATTTSTTSTTNTNNITNNTNNNLSIIFDSQEEIDNDISASIDFTSSSSFLVPTLLPINTTHQEQFDFSSTQPHHNLELSTCSVLKGLSSQYQTDISPVSAPAQLIGAASFPSMFEDDCISSIPSCNPYLSNGLGLYMPQGNLNTALSADSSSLFGGGILLGSEMQTQDLDYQGENGGIYCTDSVQQVFNPQDFQALGTENHKLVSGAGSANLAPEISHLEDSSLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENQRAASSNHEDDDEIVVKEEDDMVDSSDIFAHISGLNSFKCNYSIQSLI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01667 430 ProSiteProfiles CCT domain profile. 334 376 IPR010402 GO:0005515
Trre2g01667 430 MobiDBLite consensus disorder prediction 372 394 - -
Trre2g01667 430 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 44 391 IPR045281 GO:0009909
Trre2g01667 430 Pfam CCT motif 334 376 IPR010402 GO:0005515
Trre2g01667 430 MobiDBLite consensus disorder prediction 85 120 - -
Trre2g01667 430 MobiDBLite consensus disorder prediction 372 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01667 Trre-Chr2 13519552 13524068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01667 313 382 C2C2-CO-like Transcription Factor Family AT5G24930 38.571 3.03e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g01667 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01667 - - gmx:100807304 486.878