Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01649 ATGGAATTAGAGAGTGTAACTTCAAGTGAAGAAAGTGATGAGCAAGTAGTTCAAGATGAATCAATAGAAACCAAACGTTCTTATGATTGCACATTTTGCAAAAGGGGTTTCACTAATGCAAGGGCATTAGGAGGCCACATGAATATTCATAGAAAAGAAAGAACAAATTATAAAACCAAACAAGGCACACCAAATTCCTCACCTTTTGTTCCAATTGTTTCAAGCCAACCCTCAACATATTATTGCATTTTAGAACCTCCTAGGAACTATGACATGTATATTCAACCATCAAAAGCTAACCCGTCCCCACCTAGTTTTTTTCAATATGATTTTCTTAACAAAAACTCTATGGGAACCAATTTGAGTCTCCAAATTGGTTCAAGCCATGAGGGTAATGATCATGTTTGGAGAGGAATAGGGAAAGATGGTGAAGGGGTGGACTTAGAGCTTAGGCTTGGTCATGATTCATACTCAAACTACTAA 483 0.3706 MELESVTSSEESDEQVVQDESIETKRSYDCTFCKRGFTNARALGGHMNIHRKERTNYKTKQGTPNSSPFVPIVSSQPSTYYCILEPPRNYDMYIQPSKANPSPPSFFQYDFLNKNSMGTNLSLQIGSSHEGNDHVWRGIGKDGEGVDLELRLGHDSYSNY 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01649 160 MobiDBLite consensus disorder prediction 1 21 - -
Trre2g01649 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Trre2g01649 160 MobiDBLite consensus disorder prediction 1 17 - -
Trre2g01649 160 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Trre2g01649 160 SUPERFAMILY beta-beta-alpha zinc fingers 25 55 IPR036236 -
Trre2g01649 160 Gene3D Classic Zinc Finger 5 68 - -
Trre2g01649 160 PANTHER OS07G0101800 PROTEIN 5 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01649 Trre-Chr2 13349994 13350476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01649 19 153 C2H2 Transcription Factor Family AT3G09290 32.432 4.06e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g01649 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01649 - - mtr:25483021 278.485