Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01648 ATGAATTCGTCAGAGCAACAGTGGGCAAACACATTTAAGAAGCCCGACTTACAGAATTCGCAGCATGGCATCAGCTCCTCCGGTGGAGGAGATGGTGAAGACAATACTCCAAAACAAAAGGCAAGATGGTATGCAAATGAAGAGCAACTCCAAATTCTAGAAACCACCTTCAACTCAGGGATGACAAACCCTAAAAGTAAAGACATAAAGAAAATAGTTGCACAGTTACAAGAATTTGGCCCTGTTGGTGAATCTAATGTTTTCTACTGGTTTCAGAATCGTAAGACAAGGAATAAGAATAAACACAAACAAAGACAACCCTACAATAGGTCTAATAGAAAATCAACAAAAAAATCTCCAACTTCTCATTCTAGTAATTCTATAATCCCAACTCAAAACATCATAGAAGAACCACCTCATTCATCTTCAACATCTTCCTATGATCACCAAAATGTATCTCCTAATGAATTAATGGTACCTAACAATGTTTCAGCTTCTAATGACACAATTTCTTTGAACCAACAAAACCAAGTTGCTGCTCAAACTGATCTTCAGATACCTACAACACCATTTTTCTCTGATGAGCTTCTCAATATGGTTCAGCCTACAATGCCTCAAGAAATTGTTGATGTGTCTGATTTGCTGAATCATGAGGACTTTATGAATTATTTGACTCAAATCCAAATGAATGACCAATATGATCATGGAGCTTCAATGAATATGGTGCAACAAGAACAAGACCCACAACTTAGTTTTGGGGTTACCTCAAATTTAAACAATCTTGATTCAGCTGATCTTGCTCCTCTTCCTCCCATTACCATTGATGAATCTCTTGTTGATCCTTTCCCCATTACTCAATTTCAAGGTGTTGGTGAGGCTGATGGTGGTGCGGCAAAATGTACAGTGAGTATTAACAACCAGGTATTCGATGCTGATGTGGGACGCTTTAATGTCCGGGTAATCTTTGGAGATGGAGTCATTCTCACTGACTCCTTCCTCCAACCTGTTCCCATCGACGAGTGGGGTGTCACCCTTGAGCCGCTTCAAAATGGTGCTTCTTATTTCTTGGCGAAAGCAGACAAAAAAGGCCTTAGTGATGGTTTGGGGAGCGGTTATTTGAGCTTTATGGCATCATCGTAA 1140 0.3974 MNSSEQQWANTFKKPDLQNSQHGISSSGGGDGEDNTPKQKARWYANEEQLQILETTFNSGMTNPKSKDIKKIVAQLQEFGPVGESNVFYWFQNRKTRNKNKHKQRQPYNRSNRKSTKKSPTSHSSNSIIPTQNIIEEPPHSSSTSSYDHQNVSPNELMVPNNVSASNDTISLNQQNQVAAQTDLQIPTTPFFSDELLNMVQPTMPQEIVDVSDLLNHEDFMNYLTQIQMNDQYDHGASMNMVQQEQDPQLSFGVTSNLNNLDSADLAPLPPITIDESLVDPFPITQFQGVGEADGGAAKCTVSINNQVFDADVGRFNVRVIFGDGVILTDSFLQPVPIDEWGVTLEPLQNGASYFLAKADKKGLSDGLGSGYLSFMASS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01648 379 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 357 IPR044557 GO:0003700|GO:0050793
Trre2g01648 379 SMART HOX_1 38 105 IPR001356 GO:0003677
Trre2g01648 379 MobiDBLite consensus disorder prediction 1 42 - -
Trre2g01648 379 CDD homeodomain 40 102 IPR001356 GO:0003677
Trre2g01648 379 MobiDBLite consensus disorder prediction 1 33 - -
Trre2g01648 379 SUPERFAMILY Homeodomain-like 36 106 IPR009057 -
Trre2g01648 379 Gene3D - 32 101 - -
Trre2g01648 379 Pfam Homeodomain 40 100 IPR001356 GO:0003677
Trre2g01648 379 ProSiteProfiles 'Homeobox' domain profile. 36 101 IPR001356 GO:0003677
Trre2g01648 379 MobiDBLite consensus disorder prediction 95 112 - -
Trre2g01648 379 MobiDBLite consensus disorder prediction 94 161 - -
Trre2g01648 379 MobiDBLite consensus disorder prediction 113 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01648 Trre-Chr2 13342273 13345666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01648 1 356 Wox Gene Family AT5G45980 28.272 1.86e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre2g01648 Homeodomain 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01648 - - tpra:123892054 265.388