Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01640 ATGTCTTTCATATATGTTTTTAGCAAGTTGCAAGAAGAAGTTGCAGCCTTTTATAGAATCAGTCAATTGCGAATAGCAAATCTGGCTAATCCGTGGTGGACAGGTCATCAGGTAGGATTGCCTGGGGTGGTAGATCATAACTCCCACCCGTTAGGCAGTCCACCTGGTATAAACAAACGCCACCATACCGAACTTTTCATCAATGAAAACAAAAGAAGAGAAGAAGAAGATGACGATGATGAAGAAAGAGACAACGACGATGATGAGCCAAAAGAAGGTGCAGTTGAAATCGGAAACCGAAGACCAAGAGGAAGACCACCAGGTTCAAAAAATAAACCAAAACCACCAATTTTCGTAACAAGAGACAGTCCAAATTCACTAAAAAGCCATGTGATGGAAGTATCATCCGGAGCAGATGTAGCCGAAAGCGTAGCTCAGTTTGCAAGAAGGCGACAGCGCGGTGTTTGTGTCTTAAGTGGTAGCGGATCAGTAGCAAATGTTACCCTTAGACAACCAGCAGCACCAGGAGCTGTTGTAGCACTACACGGAAGATTCGAGATTTTATCGTTAACCGGAGCTTTTCTACCAGGACCTGCTCCTCCAGGTGCTACAGGACTCACAGTGTACCTTGCTGGTGGACAAGGTCAAGTTGTTGGAGGAAGTGTTGTTGGATCTTTAATTGCTGCTGGACCTGTTATGGTTATTGCTGCTACTTTTGCTAATGCTACTTATGAAAGATTGCCACTTGAGGATGAAGAGGATGATGGCAGCGGCGGCGGTGGTGGTCATGTAGGACATCATGTTGGAGGTGGTAATTCTTCTCCTCCTGGAATTGGAAGTAGTGGCGGAGGCGGAAGCGGTGGTGGTGGGGGCCACATGCAGTCTGGCCATCTTCCAGATCCATCTTCTTTGCCTTTATATAATTTGCCACCAAATCTTCTTCCTAATGGTGGTCAGGTGGGACATGAATCTTTTCCTTGGCCTCATGGAATTAGGCCACCTTATTGA 1008 0.4593 MSFIYVFSKLQEEVAAFYRISQLRIANLANPWWTGHQVGLPGVVDHNSHPLGSPPGINKRHHTELFINENKRREEEDDDDEERDNDDDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFVTRDSPNSLKSHVMEVSSGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGSLIAAGPVMVIAATFANATYERLPLEDEEDDGSGGGGGHVGHHVGGGNSSPPGIGSSGGGGSGGGGGHMQSGHLPDPSSLPLYNLPPNLLPNGGQVGHESFPWPHGIRPPY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01640 335 MobiDBLite consensus disorder prediction 250 335 - -
Trre2g01640 335 MobiDBLite consensus disorder prediction 44 126 - -
Trre2g01640 335 Gene3D - 128 254 - -
Trre2g01640 335 FunFam AT-hook motif nuclear-localized protein 127 254 - -
Trre2g01640 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 124 252 - -
Trre2g01640 335 CDD DUF296 128 211 IPR005175 -
Trre2g01640 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 72 329 IPR014476 GO:0003680
Trre2g01640 335 MobiDBLite consensus disorder prediction 74 89 - -
Trre2g01640 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 240 IPR005175 -
Trre2g01640 335 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01640 Trre-Chr2 13267106 13268491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01640 28 335 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.450 2.15e-105 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01640 - - ahf:112778740 308.145