Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01631 ATGGCGTTATTGGGTCAGTGGAAGGATGAACTTGAAACACATTCAAAACCAGGCAGCATATCCATATTTGTTCATTATGGTGGGGGCAGAACCAATAATCCTGATTTGTTGTTAGAGTATGATGTTGTCCTGACTACTTATGGTGTCCTATCCGCTGCATATAAAAGTGAAGGAGAGAATAGCATCTACCACAGGGTCAAGTGGTACAGAGTGGTGCTAGATGAAGCTCATCATATAAAAACCCATAAAAGCCAGGTTGCCCATGCTGCTATTGCTCTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTAGAAGATCTATACAGTCTCTTGTCTTTCTTGCGTGTTGAACCTTGGTGCAACTGGCAGTGGTGGACTAAGTTGATTCAAAAGCCCTATGAGCAGGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGAAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGGTTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGCGATCTAAAGTCCAATTTGCGCAGTATGTTGCACAAGGAAAGGTTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTGAGACGGTGCTGCAACCATCCATTTTTGGTCATGAGTGGAAGTGATCCTGCAAAATATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTTGAGTCTCATACTGAATCATCTGATATGTGCTGTGAAAGTGGCGCACAGCAAAATGAAGAATTGACCAAACTTGCTAGTACATTTCTACAGAATTCTGCTTCTGCTTCGCACTCTATCCAATCTCGTGGATACATAGACGAGGTTTTGGGGCATATTCAAAAGGGTGAAACTGTAGAATGCTCTATATGCATGGAATCACCAGATGATCCTGTTTTTACACCATGTGCACATCAGTTTTGTAGAGAATGCCTATTCAATTGCTGGGGTACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAATCACTCAAGAAGAATGATCTTATTGCTCTTCCAACAGAAAGCCCATTCAAGGTTGATATTGAGAACAATTTGACGGAGTCTTCAAAGCTTTCAAAGCTCTTTGATTTCTTAGAAAAAATTCAGAAGTATTCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTCGATCTGTTGAAAAATCCATTGAGGAGGAGAGGAATAGGATTCTTAAGATTTGATGGAAAATTGACTCAGAAGCAGAGAGAAAAAGTTCTGAAAGAATTTAACGACACGAAAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTGGGCTTGAACTTGACTGCAGCCTCAAATGTTTTCCTTATGGATCCATGGTGGAATCCAGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATCGGGCAAAAGCGAAGGGTTACTGTAAGAAGATTCATTGTGAAGGGCACAGTGGAAGATCGGTTGCAACAAGTGCAAGCCAAGAAACAGAAGATGATATCTGGTGCCCTTACTGATGATGAAGTTCGGACTTCCAGGATTCAAGATCTCAAAATGCTATTCTCATAG 1671 0.4135 MALLGQWKDELETHSKPGSISIFVHYGGGRTNNPDLLLEYDVVLTTYGVLSAAYKSEGENSIYHRVKWYRVVLDEAHHIKTHKSQVAHAAIALSSHCRWCLTGTPLQNSLEDLYSLLSFLRVEPWCNWQWWTKLIQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLVECEQSESERDFYDALFLRSKVQFAQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMSGSDPAKYADLSRLARKFLESHTESSDMCCESGAQQNEELTKLASTFLQNSASASHSIQSRGYIDEVLGHIQKGETVECSICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQSLKKNDLIALPTESPFKVDIENNLTESSKLSKLFDFLEKIQKYSDEKSIVFSQWTSFFDLLKNPLRRRGIGFLRFDGKLTQKQREKVLKEFNDTKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVTVRRFIVKGTVEDRLQQVQAKKQKMISGALTDDEVRTSRIQDLKMLFS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01631 556 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 555 - -
Trre2g01631 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 161 IPR027417 -
Trre2g01631 556 Pfam Zinc finger, C3HC4 type (RING finger) 318 364 - -
Trre2g01631 556 Gene3D - 175 274 IPR027417 -
Trre2g01631 556 SMART helicmild6 420 503 IPR001650 -
Trre2g01631 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 547 IPR027417 -
Trre2g01631 556 CDD SF2_C_SNF 376 514 - -
Trre2g01631 556 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Trre2g01631 556 Pfam Helicase conserved C-terminal domain 390 503 IPR001650 -
Trre2g01631 556 Pfam SNF2-related domain 2 239 IPR000330 GO:0005524|GO:0140658
Trre2g01631 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 552 IPR001650 -
Trre2g01631 556 SUPERFAMILY RING/U-box 316 369 - -
Trre2g01631 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 368 IPR013083 -
Trre2g01631 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 123 IPR014001 -
Trre2g01631 556 Gene3D - 1 162 IPR038718 -
Trre2g01631 556 Gene3D - 369 555 IPR027417 -
Trre2g01631 556 ProSiteProfiles Zinc finger RING-type profile. 320 360 IPR001841 -
Trre2g01631 556 CDD DEXDc_SHPRH-like 1 161 - -
Trre2g01631 556 SMART ring_2 320 359 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01631 Trre-Chr2 13165238 13168493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01631 1 555 RAD5 or RAD16-like Gene Family AT5G43530 66.547 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g01631 SNF2_N 2.1e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01631 K15505 - gmx:100806677 900.197