Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01629 ATGATGGAACGGTCTGAACAAGAAAATGGAACGTTCCAGAAGGTTTTCCGCACAATGGAAAACGACGACGTCGTTTTTAGAAACGGCAATGCAGTTCTTGTCGCAAAGCCACTCACTGTTGTTCGTGCCTTAACCAGCACCGGCGGCGCTCGTGTTCTTGCAACGCCGCCGAATCTGAACCCTAACTCCGATGAGTTTGATTCATGTGAAACTCCAATGATCAAAGTGAAAGACGAGCCTCAAGAATTAGAAAGAGAAGTAAAAACTGTTATAGCCGATTCTCAATCTGCGGCGGCGGAGGTGGTTTCTGAGGAGCGGTGTTCGATGCTGTCGTTTGATGATTTTCTTAAGGCTACGAATACGCAAGTTGCTTCTGTAGATGAATCGTTGAAATCAATGGAAGTTGAATCGACGAAGATGGAAAGTGCTGATGTTGATGTGGTTTGTGAGACGCAAGAGTCGATTAAGGTTGAATCGGTAGATGAATCGCTGAAATCGGTAGATGAAGGTACCAATGTTGATGTGGCTTGTGAGACGCAGGAATCGATTAGTGTTGAACCGGTTAAAGAAACAACACCAATTGAACCGGTTGGACCGGTTTGTGCAGAGAAGCAAGCGGTTAGCGATGATGAAGTGGAAGTTTTGAAGGTAGTGAAAGGGAAACAAGCTGCGACTGTGAGTGATGAAGTGAGGGTGTTGAAGGTGGTGAAGAAGGAAGCAGTGGAAGAGAAGAAGATCCTGATTCCGAATCTCGACGACGGTGATTTCCCTGTTGAACCTGGCTGGTCATTGCTTGGAAGCAAGGTTGAGGTTGCGACTTCAATGGCTAAAGGAGTGAGGAGATTAGTGGATAATGAGATTGTTTATTTCAATTTCCCTAATCCACATGCCTCTTACAAGTTTCAATGGATCGTTCGTGTCTCAACCAAACGTTCTGGAGTGGTTGGAAGGTTGCCAATGGAATGGGCGAAATCTGTTATTCCTCTTGTACGATCAGGAAATGTTAAGGTACGAGGCCGATGCGTTGCTGCCTCAGATAAGCTGGAACCGATGCAAGACATCTTTTTGTTAGTGAGTTTTTATGTTCATAACTCTCTATTCGCTGAGTGTGTTGATACCTCTTGGAGGTTAGAGGCTTGTGGTAACATAAACTCTGCTGCTTATCCACTCTTTACCCTGTTAAATATGCTAGGGATTGAGCCATATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCTCGGAAGCGGGTGCTTAAACTTGATTCGGACGAAGCTTTGTCATTTCCTGTCAATAAGCGAAGAAAAGCTGTTGAGCCGCTTCCACAGCCAAGTGAGGATGAACAGGCTCTTTCAGAGTCAGCTCTGAATAAACTTGTTGGAGCTGCTGAAGTCTTTGACCTAGAGGAGAAGGAAGCACCAAAGACCCTAATGTGTAGTCTAAATCCTTACCAGAGTCAAGCTCTATATTGGATGACAGAAATTGAGAAGGGAGGTGATGATGAAAATGCTGAGAGAAATCTGCACCCTTGTTGGTCAGCCTACAATTTATGCCATGGAAGGACAATTTATGTCAACATATTTACTGGAGAGGCAGCAAAGAAATTTCCACAAGCAACACAGATGGCAAGAGGAGGAATTCTGGCGGATGCAATGGGACTTGGAAAAACTGTTATGACAATTGCTTTGATTCTAAGTAATACAGGCAGGATGAGGTCAGAGGACAGTGATGCAGATATGACAACATTTTCTCAACTAAGAGGAGGAATGTTAACCCATATAATGTAG 1788 0.4441 MMERSEQENGTFQKVFRTMENDDVVFRNGNAVLVAKPLTVVRALTSTGGARVLATPPNLNPNSDEFDSCETPMIKVKDEPQELEREVKTVIADSQSAAAEVVSEERCSMLSFDDFLKATNTQVASVDESLKSMEVESTKMESADVDVVCETQESIKVESVDESLKSVDEGTNVDVACETQESISVEPVKETTPIEPVGPVCAEKQAVSDDEVEVLKVVKGKQAATVSDEVRVLKVVKKEAVEEKKILIPNLDDGDFPVEPGWSLLGSKVEVATSMAKGVRRLVDNEIVYFNFPNPHASYKFQWIVRVSTKRSGVVGRLPMEWAKSVIPLVRSGNVKVRGRCVAASDKLEPMQDIFLLVSFYVHNSLFAECVDTSWRLEACGNINSAAYPLFTLLNMLGIEPYRKADFTPEEMKARKRVLKLDSDEALSFPVNKRRKAVEPLPQPSEDEQALSESALNKLVGAAEVFDLEEKEAPKTLMCSLNPYQSQALYWMTEIEKGGDDENAERNLHPCWSAYNLCHGRTIYVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNTGRMRSEDSDADMTTFSQLRGGMLTHIM 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01629 595 Gene3D - 455 581 IPR038718 -
Trre2g01629 595 Pfam SNF2-related domain 484 566 IPR000330 GO:0005524|GO:0140658
Trre2g01629 595 SMART HIRAN_2 265 362 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre2g01629 595 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 401 569 - -
Trre2g01629 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 568 IPR027417 -
Trre2g01629 595 Pfam HIRAN domain 272 356 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01629 Trre-Chr2 13162605 13165211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01629 178 577 RAD5 or RAD16-like Gene Family AT5G43530 48.894 6.06e-113 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g01629 SNF2_N 7.9e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01629 K15505 - gmx:100806677 544.273