Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01624 ATGGATTCTTATGAATTATTAGAAAACATCGATTCTTTAGATTTTCTCGATTACTCTAATTTCATCGATCCTTCTCCTCCCACAGATTTTCTTTGGTCCAATCCAAGTGTGAGCACGGAAATTGACATTCCAAGTGGCGCTGTTGCGTGTCAAGAAGAGAATACTAGAAAGAGGGGACGTGCTGAATCATGCTACAAGTCAGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAGCTCAATGAAAGGTTTTGTGATTTGAGCTCTGTTTTGGAACCCGGAAGACCTGTGAGAACAGATAAACCTGCTATACTTGACGATGCTATCAGAGTCTTGAACCAACTTAAAACTGAAGCTCAGGAACTGAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTGCGCGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGATTGAGAAGCAATTGAAAACTATGCCACCGCCTATTTCACCAGCAGGGTTTATGCCTCCTCATCCAATGGCTGCTGCTTATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTATATTCCAATGTGGCAATATCTTCCTCAGTCGGCTCGCGATACATCTCAAGATCACGAGCTCAGGCCTCCTGCTGCATAG 675 0.4163 MDSYELLENIDSLDFLDYSNFIDPSPPTDFLWSNPSVSTEIDIPSGAVACQEENTRKRGRAESCYKSGTKACREKLRREKLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLNQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKTMPPPISPAGFMPPHPMAAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01624 224 Coils Coil 106 161 - -
Trre2g01624 224 Pfam Helix-loop-helix DNA-binding domain 68 116 IPR011598 GO:0046983
Trre2g01624 224 PANTHER BHLH TRANSCRIPTION FACTOR 17 224 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trre2g01624 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 116 IPR011598 GO:0046983
Trre2g01624 224 Gene3D - 69 149 IPR036638 GO:0046983
Trre2g01624 224 SMART finulus 71 122 IPR011598 GO:0046983
Trre2g01624 224 FunFam Transcription factor bHLH104 68 149 - -
Trre2g01624 224 CDD bHLH_AtILR3_like 70 145 - -
Trre2g01624 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 130 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01624 Trre-Chr2 13111779 13114558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01624 45 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 68.817 1.86e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01624 HLH 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01624 - - mtr:11419849 368.622