Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01623 ATGGATTCTTATGAATTATTAGAAAACATCGATTCTTTAGATTTTCTCGATTACTCTAATTTCATCGATCCTTCTCCTCCCACAGATTTTCTTTGGTCCAATCCAAGTGCGAGCACGGAAATTGACTTTGCAAGTGTGAGCACGGAAATTGACATTCCAAGTGGCGCTGTTGCGTGTCAAGAAGAGAATACTAGAAAGAGGGGACGTGCTGAATCATGCTACAAGTCAGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAGCTCAATGAAAGGTTTTGTGATTTGAGCTCTGTTTTGGAACCCGGAAGACCTGTGAGAACAGATAAACCTGCTATACTTGACGATGCTATCAGAGTCTTGAACCAACTTAAAACTGAAGCTCAGGAACTGAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTGCGCGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGATTGAGAAGCAATTGAAAACTATGCCACCGCCTATTTCACCAGCAGGGTTTATGCCTCCTCATCCAATGGCTGCTGCTTATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTATATTCCAATGTGGCAATATCTTCCTCAGTCGGCTCGCGATACATCTCAAGATCACGAGCTCAGGCCTCCTGCTGCATAG 702 0.4188 MDSYELLENIDSLDFLDYSNFIDPSPPTDFLWSNPSASTEIDFASVSTEIDIPSGAVACQEENTRKRGRAESCYKSGTKACREKLRREKLNERFCDLSSVLEPGRPVRTDKPAILDDAIRVLNQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKTMPPPISPAGFMPPHPMAAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01623 233 SMART finulus 80 131 IPR011598 GO:0046983
Trre2g01623 233 CDD bHLH_AtILR3_like 79 154 - -
Trre2g01623 233 Gene3D - 78 158 IPR036638 GO:0046983
Trre2g01623 233 PANTHER BHLH TRANSCRIPTION FACTOR 16 233 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trre2g01623 233 FunFam Transcription factor bHLH104 77 158 - -
Trre2g01623 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 139 IPR036638 GO:0046983
Trre2g01623 233 Coils Coil 115 170 - -
Trre2g01623 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Trre2g01623 233 Pfam Helix-loop-helix DNA-binding domain 77 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01623 Trre-Chr2 13111779 13114558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01623 54 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 68.817 1.65e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01623 HLH 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01623 - - mtr:11419849 380.563