Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01616 ATGAATTTTGTAACCAAAAACCACTTGATCCATCATGTGTCACTAGCTCTTTCACCTATGCCAAGTCCTCCTAATTCTACTACAAATTTTCCAACCATAGCAATAATTGTAGTAGGAATGATGGCAACATCTTTGTTGCTAATGGCCTACTACACCTTTGTGATTAAATGTTGTCTCAATTCGAACAATATTGATCTTATTATAGCAAGAAGTTTTTCTTTTTCAAGACAACATGAAAATCAATCTTCATCGATCTCAATAGCATCAGAGTCAAGAGGATTAGACCAAGAAGTGATTAATTCGATTCCAATAATTCATTACAAAAGTGAAAAAGAAAATGGTGAATGTGCTTTTTGTTTGAGTGAGTTTGAACAAGATGAGAAACTAAGAGTTATACCAAATTGCAACCATTTATTTCACATTGATTGTGTTGATATTTGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGTAAAGTTTCATTGACAAGAGAATTCCAAGTTGATCAACATGTTTTAACTCCAAGACCTTCACCTTATTTTCAAAGCCAAAATGTTGAAAACATCATTGGTGGTTATGAAGATTTTGTTGTGATTGATTTGGATAATAATGAACATGTTGATGAAGGACAAAACTTGCATGAAATAAGAGAAGAAAGAGGTAAAGAATTGGAAGTGTCAAGAGATTCTATTAGTCCTTTACACAAAAAAGCAATTAAGCTTCAAAAAGTGACTAGCATGGGGGACGAGGGTATAATTGGTTTTAAAGACAAATTTGATGGTTTCTTAGTTCAACCAATTAGAAGGTCTTTCTCAATGGACTTATCCATTGAAGTTTGTGGTGATAGTAGTAGAAGGGTAAAGAGGTCATTCTTTCCATTTGGACATGGAAGTATATCAAGAAGTTCTGTTTTACCTATTCAATTGGAACCTTAA 939 0.3301 MNFVTKNHLIHHVSLALSPMPSPPNSTTNFPTIAIIVVGMMATSLLLMAYYTFVIKCCLNSNNIDLIIARSFSFSRQHENQSSSISIASESRGLDQEVINSIPIIHYKSEKENGECAFCLSEFEQDEKLRVIPNCNHLFHIDCVDIWLQNNANCPLCRSKVSLTREFQVDQHVLTPRPSPYFQSQNVENIIGGYEDFVVIDLDNNEHVDEGQNLHEIREERGKELEVSRDSISPLHKKAIKLQKVTSMGDEGIIGFKDKFDGFLVQPIRRSFSMDLSIEVCGDSSRRVKRSFFPFGHGSISRSSVLPIQLEP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01616 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 163 IPR013083 -
Trre2g01616 312 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Trre2g01616 312 SUPERFAMILY RING/U-box 98 167 - -
Trre2g01616 312 SMART ring_2 116 157 IPR001841 -
Trre2g01616 312 Pfam Ring finger domain 115 158 IPR001841 -
Trre2g01616 312 FunFam E3 ubiquitin-protein ligase ATL6 82 164 - -
Trre2g01616 312 CDD RING-H2_EL5-like 115 158 - -
Trre2g01616 312 PANTHER RING-H2 FINGER PROTEIN ATL16 17 308 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01616 Trre-Chr2 13049328 13050266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01616 20 312 C3H Transcription Factor Family AT1G04360 40.896 1.75e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01616 - - psat:127097049 367.466