Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01615 ATGGATTGTTCCTTCATACCCTTTTCATCAAAATCAAATTTTTTTCCACAATCTTCATTTGGGTCACAAGATTCAATCTCATTGAATCCAAAGAATCACCATGAGTTTCTTCCCTTCAATGAAAATGACCCAGAAGAGATGCTTCTATATGGCATGATAACATCATCATCACAACAACAAAGTAGCAAACAAACAACAACAACAATAACAAACAACAATAAAGAGAAGAACAACAAATCCTACCGAGGCGTGCGAAGGCGACCGTGGGGGAAATTCGCAGCCGAAATTAGGGATTCGACGAGACATGGTATACGGGTTTGGCTTGGAACATTTGATAGTGCTGAAGCAGCAGCATTAGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCATCTGCAACACTTAATTTTCCAGTTGAAAAGGTTAAGGAATCACTTAGAGACATGAATTATGTGTTGTCTAATGATGGTGAATGTTCCCCTGTTATTGCTTTGAAGAGAAAACATTCAATGAGACGTAAAATGGATGAAAAGAAGAAGAAACATGAGACAGATGTTAGGATTGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGAATATTTGGAACAATTGTTGATGTCTTCTGATGATAATCAAATTACTTGGTGA 651 0.3702 MDCSFIPFSSKSNFFPQSSFGSQDSISLNPKNHHEFLPFNENDPEEMLLYGMITSSSQQQSSKQTTTTITNNNKEKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFPVEKVKESLRDMNYVLSNDGECSPVIALKRKHSMRRKMDEKKKKHETDVRIDNLVVFEDLGAEYLEQLLMSSDDNQITW 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01615 216 PANTHER DNA-BINDING DOMAIN 45 207 IPR044808 GO:0003700|GO:0009873
Trre2g01615 216 FunFam Ethylene-responsive transcription factor 2 79 140 - -
Trre2g01615 216 SUPERFAMILY DNA-binding domain 80 140 IPR016177 GO:0003677
Trre2g01615 216 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Trre2g01615 216 PRINTS Ethylene responsive element binding protein signature 120 140 IPR001471 GO:0003700|GO:0006355
Trre2g01615 216 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Trre2g01615 216 Gene3D AP2/ERF domain 79 140 IPR036955 GO:0003700|GO:0006355
Trre2g01615 216 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Trre2g01615 216 MobiDBLite consensus disorder prediction 55 77 - -
Trre2g01615 216 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Trre2g01615 216 MobiDBLite consensus disorder prediction 55 82 - -
Trre2g01615 216 CDD AP2 81 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01615 Trre-Chr2 13035241 13035891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01615 5 216 AP2-EREBP Transcription Factor Family AT3G23240 59.174 2.94e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g01615 AP2 7.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01615 K14516 - jre:109007057 244.202