Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01607 ATGGTTAGAGCTCCTTGTTGTGAAAAGGAAGGATTGAAGAAGGGTCCTTGGACTTCAGAAGAAGATGAAATCCTCACATCTTACATCCAAAAACATGGACATGGCAATTGGCGTGCCCTACCAAAACATGCCGGCTTATTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAACTATTTAAAACCAGATATTAAGAGAGGAAATTTCACAAATGAAGAAGAAGATATTATCATTAAGATGCATGAATTGCTTGGGAACAGGTGGTCAGCAATAGCAGCAAAATTACCGGGAAGAACAGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAGATTAATCAAAACCAATAATAATCAACCAAATTCAAATACCAAAAAAAGAGCATCAAAATCAAAAATCAAAAGAACTGATTCCAATTCAAGCACTATAACTCAATCACATGAACCTTCTAATAATGGTCCTAATTATTTCATTGAAATGGAAACTACATCATCAAATTCCACTTTTTCTAGTGATTTTTCATCACAAGGAAAAAATATTGACAATAGTATCAATAATTTTGAAGACCCTGAAGACTCATTTGTTACAATGCTTGAAATTGATGAAAGTTTTTGGTCAGAGACAGTAACTGATGATGAAATAAGTTCAACCATGCCATCAAATTCTTCTATGACAATTATTTCAAATGAATTGCCAAATCAGCAATACCCTATTGATAATTCAGTGGAAAATTTCCAAAAATCCTTTGATGATGATGATGGTATGGATTTTTGGTATGATCTGTTCATTAGATCAGGGGAATCAATAGAATTGCCAGAGTTCTAG 837 0.3333 MVRAPCCEKEGLKKGPWTSEEDEILTSYIQKHGHGNWRALPKHAGLLRCGKSCRLRWINYLKPDIKRGNFTNEEEDIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLIKTNNNQPNSNTKKRASKSKIKRTDSNSSTITQSHEPSNNGPNYFIEMETTSSNSTFSSDFSSQGKNIDNSINNFEDPEDSFVTMLEIDESFWSETVTDDEISSTMPSNSSMTIISNELPNQQYPIDNSVENFQKSFDDDDGMDFWYDLFIRSGESIELPEF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01607 278 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre2g01607 278 CDD SANT 69 112 IPR001005 -
Trre2g01607 278 CDD SANT 16 61 IPR001005 -
Trre2g01607 278 MobiDBLite consensus disorder prediction 139 163 - -
Trre2g01607 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre2g01607 278 SMART sant 13 63 IPR001005 -
Trre2g01607 278 SMART sant 66 114 IPR001005 -
Trre2g01607 278 Gene3D - 68 144 - -
Trre2g01607 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Trre2g01607 278 Gene3D - 13 66 - -
Trre2g01607 278 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre2g01607 278 FunFam Myb transcription factor 11 67 - -
Trre2g01607 278 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre2g01607 278 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre2g01607 278 MobiDBLite consensus disorder prediction 171 190 - -
Trre2g01607 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre2g01607 278 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre2g01607 278 MobiDBLite consensus disorder prediction 115 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01607 Trre-Chr2 12965835 12967507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01607 1 278 MYB Transcription Factor Family AT2G31180 48.057 2.56e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g01607 Myb_DNA-binding 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01607 K09422 - gmx:100806975 350.132