Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01602 ATGGCAGATCCTGATACTTTTGGGAAACCTGAACGTGATATTGAACAAGCATTCATTACTTTGAAAAGAGGAACTCAGTTAGTTAAGTATTGTCGAAAAGGGAAGCCAAAACTTTGTAATTTCAGGCTTTCACAGGATGAAACATCATTGATTTGGATTTCTCATGGAAAGGAAAAACATCTGAAGTTGTCTTCTGTTTTGCGCATCATCTCGGGACAGAGAACAGCTGTCTTTAGAAGATTTTTGCGCCCTGAAAAGGATTATCTATCATTTTCACTTATTTATAAAAAAGGCGAAAGATCACTTGATCTGATCTGCAAGGATACAGCTGAAGTTGAGGTATGGCTTTCGGGCCTTAAGGAATTAATTTCTACTGGACATAGAAAGCGGAGCTCTTCAAGTGAATTGACAGATGATAGCATTGACTCTTCTTCAATTGATCGTCCTTTTGGTGGAGCACTAGAGTTTACTTCAAGCATTTCCAAGGGCAGGTTTTCTTTTGAATCAGCTTATCGTGAATCCTCAACACATAGAAGACGATCAGATGCGGGGTCAGATAATGCAAGTATGCCAGTAAGGACAAGTGGTGTTGGAGATGGTTCTCGTGTTAGTGTGTCAAGTGTTAGCTATGCTAGTAGTGTAGCATCAGGGCCAGATGACATAGAGTCTCTAGGTGATGTTTTCATATGGGGAGAGGTTTGGGTCGACGGGAATCCCTCTGATGGGTCAGGGAGTCAAGTCCCTTCCAAGACAGATGTTCTTGTTCCTAAGCCATTAGAGTCTGATGTTGTTCTCGATGTTCATCAGATAGAACCCGGTGTAAGTCACATTGCTCTAGTAACACGGCAAGGAGAGGTTTTTACCTGGGGAGAGGACTCTGGTGGGAGACTTGGACATGGATTTGATAAAGATTTTGGTAAACCACGTCTTGTTGAGTCCATAGCGGTTACTAATATGAGTTTTGTTGCCTGTGGTGAATATCACACATGTGCTGTAGCTACATCTGGAGATCTATACACATGGGGTGACGGTACACATAATGCGGGAATTCTAGGTCATGGAACCGATGTTAGCCATTGTATTCCGAAGAGGGTCACTGGCCTTTTAGAAGGACTTCAGGTTGTATCTATATCATGTGGCTCATGGCATACAGCATTGATAACCTCCAATGCAAAACTTTTTACCTTTGGAGATGGAATGCTCGGTGTCTTGGGGCATGGAGATAGAGAGAGTGTTTCATATCCAAAGGAGGTAGAGTTATCGAGTGGACACAAGGCTATTAAGGTTGCATGTGGCGTGTGGCACACTGCAGCCATTATAGAGGTTAATGATCAATCAGGTTCAAATGCTTCTGCATCGAAGAGGCTATTCACATGGGGTGATGGCGATCAATATCGTTTAGGTCATGCTAATAAGGAAACCTATCTTCAACCGACATGTGTAGCTGCACTTTCTGAATATAATTTTCAACAGGTTGCATGTGGACAAAATTTCACTGTTGCACTAACCGAATCTGGTCATGTTTTTACTGTGGGAAGCACAGCACACGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTACCGATTCTAGTAAGAGATAAATTACAAGGTGAATCAGTTGAAGAAATATCATGCGGCACACATCATGTTGCTGCATTGACTGCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCGAATGGAAGATTAGGACATGGAGACACAGACGATCAGAAAACTCCAACGTTGGTGGAAGCCTTGAAAGAAAGGCATGTAAAGAATATCGCATGTGGCGCAAATTTTACAACTTGTATATGCATACATAAATGGGTTTCTGGGAATGACCAATCGGTTTGCTCCGGTTGTAGACAACCTTTTGGTTTTACTAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGTATTGTCATCCTTGTAGTTCGAAAAAGGCGCTGAAAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGCGTGTGTGATGTTTGTTACGCAAAGCTTAAAGGTTCTGATAGTCTTAACGCATCCAATTATAGTAGAGAAATTAGTCGTCCAGTTAGTACCTCATATGGAAGATATGACAAGGGAGAGGTAAGGCCTTCTTCAAGAATTCTCTTAACTTCTTCTGCCACAGGTCTAGTGAAATACCTTGACTTAAGGACTAATATGCTTGGAAGTACACACGAATCTTCTTCCATCGGAAGAGATGCTCAAACTCAGTTGCGTTTGCAATTGAAAGATGTCGTATTTCCAGGTTCATCAATTTCCACGCAGAATGCTTCCAGGCCTCTTATTATGCCGCAAAGTCAACCATCAACTGCACCTTCACCAGCTACTTCAAGACCAACTTCACCATATTCAAGAAGACCGCCTAGCCCGACACGTTCTATTTCCCCTGGATTTTCAAGAAGCATTATTGATAACTTAAAGAAGAAAAATGAGCTTTTGAATCAAGAAGTATCAAAGTTGCAAAACCATATTCGAAGTTTAAAGCAAAAGGGTGACATGCAAGATATGAAGATTCACGAGCTTCAGAAAAATATCGAGGAAGCAAATCTATTGGCAGGAGACGAATCTTCTAAGCATAGAGAAGCAAGGGATTTCATCAAGTCTATGGCAGATGAGTTGAGGGAAGTGACCGAAAAGTTGCCACCAGAGATTCCTGGCAGTGAAACCTTGAAAGAGATCCATGCTCGAGCGCAATATATTCTGAAAGAAAATTTAGAATTCGAATCTTCTTCATTCCAATCGGGCTTCGAGTCTGAAAAACAACCTGCACATGATATACCAGCAACAGATAGCAACTCTTCAAAACTGCAAGAGCTAAGATCAGAAGGAAATGATGAAACTTCTGAGGCTGTTCCATCTATAGATGGAGGAAATGTTCATCACAAAAGCAGAAGCTCGTCTTTATCGAGTATAGAAGCATCTACTCCAAGTTCAAAAAATCGTTCCAGATCACCTGAATCTCACAATTCTATGAGCGAAGTAGAAACATCCATCATTGAACAATTTGAACATGGTGTCTATGTCACAGTCGGTGTACTAGCTGATGGCGTCAAAGTTTTCAAACGTGTTAGATTCAGTAAGAGAAGATTCAATGAGCAACAAGCAGAAGAATGGTGGAACAATAACAAAGATAGGTTGCATAGGAGATACAGTCTACCACCTATACAGAATGAAATTACTGGTTCATCTAACACCTCACCTCATGCTGAAGAAAATGGTGAGGCATCACATTCTTAA 3270 0.4128 MADPDTFGKPERDIEQAFITLKRGTQLVKYCRKGKPKLCNFRLSQDETSLIWISHGKEKHLKLSSVLRIISGQRTAVFRRFLRPEKDYLSFSLIYKKGERSLDLICKDTAEVEVWLSGLKELISTGHRKRSSSSELTDDSIDSSSIDRPFGGALEFTSSISKGRFSFESAYRESSTHRRRSDAGSDNASMPVRTSGVGDGSRVSVSSVSYASSVASGPDDIESLGDVFIWGEVWVDGNPSDGSGSQVPSKTDVLVPKPLESDVVLDVHQIEPGVSHIALVTRQGEVFTWGEDSGGRLGHGFDKDFGKPRLVESIAVTNMSFVACGEYHTCAVATSGDLYTWGDGTHNAGILGHGTDVSHCIPKRVTGLLEGLQVVSISCGSWHTALITSNAKLFTFGDGMLGVLGHGDRESVSYPKEVELSSGHKAIKVACGVWHTAAIIEVNDQSGSNASASKRLFTWGDGDQYRLGHANKETYLQPTCVAALSEYNFQQVACGQNFTVALTESGHVFTVGSTAHGQLGNPNSDGKVPILVRDKLQGESVEEISCGTHHVAALTARSELYTWGRGANGRLGHGDTDDQKTPTLVEALKERHVKNIACGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDVCYAKLKGSDSLNASNYSREISRPVSTSYGRYDKGEVRPSSRILLTSSATGLVKYLDLRTNMLGSTHESSSIGRDAQTQLRLQLKDVVFPGSSISTQNASRPLIMPQSQPSTAPSPATSRPTSPYSRRPPSPTRSISPGFSRSIIDNLKKKNELLNQEVSKLQNHIRSLKQKGDMQDMKIHELQKNIEEANLLAGDESSKHREARDFIKSMADELREVTEKLPPEIPGSETLKEIHARAQYILKENLEFESSSFQSGFESEKQPAHDIPATDSNSSKLQELRSEGNDETSEAVPSIDGGNVHHKSRSSSLSSIEASTPSSKNRSRSPESHNSMSEVETSIIEQFEHGVYVTVGVLADGVKVFKRVRFSKRRFNEQQAEEWWNNNKDRLHRRYSLPPIQNEITGSSNTSPHAEENGEASHS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01602 1089 Gene3D - 449 623 IPR009091 -
Trre2g01602 1089 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Trre2g01602 1089 MobiDBLite consensus disorder prediction 762 791 - -
Trre2g01602 1089 Pfam FYVE zinc finger 610 675 IPR000306 GO:0046872
Trre2g01602 1089 SUPERFAMILY PH domain-like 14 123 - -
Trre2g01602 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Trre2g01602 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Trre2g01602 1089 Gene3D - 347 448 IPR009091 -
Trre2g01602 1089 Gene3D - 168 346 IPR009091 -
Trre2g01602 1089 MobiDBLite consensus disorder prediction 762 810 - -
Trre2g01602 1089 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 878 - -
Trre2g01602 1089 MobiDBLite consensus disorder prediction 1065 1089 - -
Trre2g01602 1089 SUPERFAMILY FYVE/PHD zinc finger 610 682 IPR011011 -
Trre2g01602 1089 MobiDBLite consensus disorder prediction 187 202 - -
Trre2g01602 1089 CDD FYVE_like_SF 620 672 - -
Trre2g01602 1089 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 377 387 IPR000408 -
Trre2g01602 1089 MobiDBLite consensus disorder prediction 923 1003 - -
Trre2g01602 1089 FunFam PH, RCC1 and FYVE domains-containing protein 1 195 443 - -
Trre2g01602 1089 MobiDBLite consensus disorder prediction 970 1003 - -
Trre2g01602 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Trre2g01602 1089 Gene3D - 13 131 IPR011993 -
Trre2g01602 1089 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Trre2g01602 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 335 387 IPR000408 -
Trre2g01602 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 392 439 IPR000408 -
Trre2g01602 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Trre2g01602 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 559 606 IPR000408 -
Trre2g01602 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 455 502 IPR000408 -
Trre2g01602 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Trre2g01602 1089 ProSiteProfiles BRX domain profile. 1007 1062 IPR013591 -
Trre2g01602 1089 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Trre2g01602 1089 SUPERFAMILY RCC1/BLIP-II 225 611 IPR009091 -
Trre2g01602 1089 CDD PH_PLC_plant-like 12 124 - -
Trre2g01602 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Trre2g01602 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Trre2g01602 1089 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Trre2g01602 1089 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Trre2g01602 1089 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Trre2g01602 1089 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Trre2g01602 1089 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Trre2g01602 1089 PRINTS Chromosome condensation regulator RCC1 signature 553 574 IPR000408 -
Trre2g01602 1089 SMART fyve_4 608 677 IPR000306 GO:0046872
Trre2g01602 1089 Pfam Transcription factor BRX N-terminal domain 865 895 IPR027988 -
Trre2g01602 1089 Coils Coil 814 841 - -
Trre2g01602 1089 MobiDBLite consensus disorder prediction 176 202 - -
Trre2g01602 1089 Pfam Transcription factor regulating root and shoot growth via Pin3 1008 1061 IPR013591 -
Trre2g01602 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 681 IPR013083 -
Trre2g01602 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Trre2g01602 1089 MobiDBLite consensus disorder prediction 1066 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01602 Trre-Chr2 12927472 12933535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01602 1010 1063 Major Intrinsic Protein MIP AT1G31880 37.037 2.48e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01602 - - mtr:11430388 1477.61