Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01594 ATGGAAACTACAAGGCGTTGGTTTAGTAAGTTCAGGTCAAAAAGTAAGGAAACTACAAGCAAGGCAAAAGAAGGGTCAAAACCCCCAATAAACGACGAACCACCTTCAACTGTAACCAAACAGAAGGTTGAAGCTGCGAAGCATTACATAGAAAATCATTATAAGAAGCAGATGCAGAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAATTGGCTGATGCCGAAGTCTCCGAGGAAGAGCAGAACAATTTGCTCAAGTATTTGGAGAAAAAGGAGACAGAAATCATGCGCCTTCAGAGACATAAGATGGGTGCTGATGACTTTGAGCCCCTGACTATGATCGGAAAAGGTGCATTTGGAGAGGTTAGAGTCTGCCGGGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGACAGGTTGAACATGTCAAGGCTGAGAGGAACCTTCTTGCAGAAGTTGATAGCACTTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGAAGAGAATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACGTTGCTGATGCGGAAAGATATACTGACTGAAGATGAAGCTAGGTTCTATGTTGGGGAGACTGTTCTAGCCATAGAGTCCATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTGGATAAACATGGTCACATGAAATTATCAGATTTTGGATTATGTAAGCCGCTGGACTGCAGTAACCTTCAGGAAAAAGACTTATCTGTTGGTATGAACAGAAGTGGACTCCTTCAAAGTGATGGACGTCCTTCAGCTCCTAAGCGCTCACAACAGGAGCAACTGCAGCACTGGCAGAAAAATCGGAGAATGCTAGCCTATTCTACGGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTGTTGAAGAAAGGATATGGCGTGGAATGTGACTGGTGGTCTCTAGGAGCCATAATGTATGAAATGCTTGTTGGGTATCCGCCATTTTATTCAGACGAACCAATGGCAACTTGTAGAAAGATAGTAAATTGGCGAACTACTTTGAAATTTCCAGAAGAAGCTAAACTTTCACCAGAGGCAAAGGATCTTATTTGCAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCATGCATGGTTCGAAGGTACTGAGTGGGACAAATTGTACCAAATGAAAGCTGCTTTTATGCCTGAGGTCAATGACGAATTAGATACTCAAAATTTCGAGAAATTTGAAGAGGCGGACAAGCAAACTGAACCTTCCTCAAAGGCAGGGCCATGGAGAAAGATGCTTCCATCTAAAGATATTAACTTTGTTGGTTACACATACAAGAATTATGAAATTGTGGATGAAAATGTAATACCTGGAATTGCTGAATTGAGGAAGAAAACAAAACCTAAAAGGCCATCTATTAAGTCCTTATTTGCCGAAGATGAATCATCGAAGACTTCGTCTAATCAACCTGTTAGAGGGAGCTTCTTAAATCTCTTACCTCCTCAGATGGAAGTTCCGGAGAAAAATGAATCACAATGA 1626 0.4108 METTRRWFSKFRSKSKETTSKAKEGSKPPINDEPPSTVTKQKVEAAKHYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQNNLLKYLEKKETEIMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSTCIVKLYCSFQDEENLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDLSVGMNRSGLLQSDGRPSAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMATCRKIVNWRTTLKFPEEAKLSPEAKDLICRLLCNVEQRLGTKGADEIKAHAWFEGTEWDKLYQMKAAFMPEVNDELDTQNFEKFEEADKQTEPSSKAGPWRKMLPSKDINFVGYTYKNYEIVDENVIPGIAELRKKTKPKRPSIKSLFAEDESSKTSSNQPVRGSFLNLLPPQMEVPEKNESQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01594 541 SMART serkin_6 112 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01594 541 CDD STKc_NDR_like 110 475 - -
Trre2g01594 541 Gene3D Transferase(Phosphotransferase) domain 1 310 429 - -
Trre2g01594 541 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Trre2g01594 541 MobiDBLite consensus disorder prediction 1 28 - -
Trre2g01594 541 ProSiteProfiles Protein kinase domain profile. 112 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01594 541 Pfam Protein kinase domain 114 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01594 541 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre2g01594 541 MobiDBLite consensus disorder prediction 507 524 - -
Trre2g01594 541 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Trre2g01594 541 Gene3D Phosphorylase Kinase; domain 1 110 195 - -
Trre2g01594 541 FunFam Non-specific serine/threonine protein kinase 83 195 - -
Trre2g01594 541 FunFam Non-specific serine/threonine protein kinase 196 263 - -
Trre2g01594 541 Gene3D Transferase(Phosphotransferase) domain 1 196 261 - -
Trre2g01594 541 MobiDBLite consensus disorder prediction 497 541 - -
Trre2g01594 541 Gene3D Phosphorylase Kinase; domain 1 430 440 - -
Trre2g01594 541 SUPERFAMILY Protein kinase-like (PK-like) 87 458 IPR011009 -
Trre2g01594 541 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
Trre2g01594 541 Coils Coil 54 88 - -
Trre2g01594 541 CDD MobB_NDR_LATS-like 46 107 - -
Trre2g01594 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 464 - -
Trre2g01594 541 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre2g01594 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Trre2g01594 541 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01594 Trre-Chr2 12856404 12861084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01594 1 535 AGC Kinase Gene Family AT4G14350 80.847 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre2g01594 Pkinase 1.4e-64 CL0016