Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01590 ATGATGGATCTTGTTATTGGTGGAAAATTTAAGCTTGGGAGGAAAATTGGGAGTGGATCATTTGGAGAGCTTTATTTGGGTGTCAATGTGCAAACTCAAGAGGAAGTAGCTGTTAAGCTGGAACCTGTGAAGACAAAGCATCCTCAACTTCTCTATGAGTCCAAATTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTCATATAAAGTGGTCTGGAGTCGAGGGTGACTACAATGTTATGGCTATTGACCTTCTTGGACCAAGTCTCGAAGACTTGTTTAACTATTGCAGTAGAAAATTCTCTCTGAAAACAGTGTTGATGCTTGCAGATCAACTATTAAACAGAGTAGAATATATGCACTCTCGGGGCTTTCTGCATCGTGATATAAAGCCCGACAACTTTCTAATGGGTTTAGGTCGCAAGGCAAATCAGGTATATATTATTGACTATGGCCTTGCGAAAAAGTATCGCGATCTTCAAACACACAAGCATATCCCATACAGGGAAAACAAGAATCTCACTGGAACCGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAAATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTGTGCAAGTCACATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCTGATTATTCATATCTTAAGAGACTCTTCCGTGACCTATTCATTAGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCGCAAATTGGATCCAGTTCTAGAACACGGCCAAGTGTGAAACCAGTCTTAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAGATTCGTGATAGATTATCAGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGGACATGGGCTGCATAAGGATCTTGCCAAGCAGCACAGGTCTTTAGATAATATGCCATCTCCCAAAGATGTGCAACCTGATTCTGACAGGGCTCGCAGTTCTACTCGTAATGGCAGTGCTTCAAAAAGGCCTATGATATCAAACAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGGTCTCAAGCAGTAGTCGTCTATCGACTACTCAAAGGGTTCAACCAGGTTTTGAATCCAAATCATCCTTCACCCGTGCCACTGCAGGGGCACGAGGTAGTCGCGATGATACACTCAGGAGCTTCGAGCTCCTGTCGATTGGTACTGGTAAAAAGAAATGA 1398 0.4263 MMDLVIGGKFKLGRKIGSGSFGELYLGVNVQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGDYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRPSVKPVLNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSGHGLHKDLAKQHRSLDNMPSPKDVQPDSDRARSSTRNGSASKRPMISNSRPSSSGEPSESRSSRLVSSSSRLSTTQRVQPGFESKSSFTRATAGARGSRDDTLRSFELLSIGTGKKK 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01590 465 PANTHER CASEIN KINASE-RELATED 14 408 - -
Trre2g01590 465 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Trre2g01590 465 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Trre2g01590 465 Pfam Protein kinase domain 11 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01590 465 MobiDBLite consensus disorder prediction 379 441 - -
Trre2g01590 465 MobiDBLite consensus disorder prediction 301 329 - -
Trre2g01590 465 FunFam Casein kinase 1-like protein 2 330 - -
Trre2g01590 465 MobiDBLite consensus disorder prediction 360 451 - -
Trre2g01590 465 CDD STKc_CK1_delta_epsilon 9 283 - -
Trre2g01590 465 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01590 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre2g01590 465 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
Trre2g01590 465 SMART serkin_6 10 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01590 465 FunFam Putative Casein kinase I 2 86 - -
Trre2g01590 465 MobiDBLite consensus disorder prediction 360 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01590 Trre-Chr2 12841326 12847819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01590 9 214 MAP Kinase Kinase Kinase AT3G06030 27.315 1.21e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre2g01590 Pkinase 5.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01590 K08960 - cave:132177205 798.119