Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01573 ATGGCCAATGGCTTTAGTAACATGAGGCAAGATGCGCTAAACTCGGTTGCATGCAGATTGTGCAACCGAGTTTTCATAAGCAGTCAAGCACTCGTTACTCACATCGAGACTCACATGGAGCACGAAGAGGCCGCAATTAGAAGACTTTATCCTATGGAGAATATCAACCCTCAAGCACAATTTTCTTCTCATAATTTCCGACCAAGTTTTCATGTTCCAATTGACACTCAAAACATCAATGGTGATAGGATTTTCCATCCACAACCAAGAAGAAACCAATTTTTCAATGTTGGTTCTATGCAAATGCAACTTCCACCACATGTTTACCAATGGAAGCATCTAGAAGAAGAATCTTCAAATGATGGTACTAAGGCATATATCATGCAACTTGAGAAACCTATCAAGAAGATTGATTTCATTGATTTGGTTAGTAATGATGATGATATGGATGGTGTTCATACATTGGATTTAGCACTTAAGCTCTAG 486 0.3868 MANGFSNMRQDALNSVACRLCNRVFISSQALVTHIETHMEHEEAAIRRLYPMENINPQAQFSSHNFRPSFHVPIDTQNINGDRIFHPQPRRNQFFNVGSMQMQLPPHVYQWKHLEEESSNDGTKAYIMQLEKPIKKIDFIDLVSNDDDMDGVHTLDLALKL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01573 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Trre2g01573 161 SUPERFAMILY beta-beta-alpha zinc fingers 11 38 IPR036236 -
Trre2g01573 161 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01573 Trre-Chr2 12685487 12685972 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g01573 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01573 - K23196 lja:Lj2g3v1643270.1 124.02