Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01572 ATGGCAGAAACAAAAGAAGGATCAAGTTCTGAGATGTCTCTGAAAGATCAAGGTAACGAGTTTTTCAAGTCAGGAAAATATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAAAAAGACCCTTCAAATCCCACACTTTATAGTAATCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAATAAAGCTCTTGATGATGCTGAAATGACTATTAAGTTAAAACCCCAATGGGAAAAGGGACATTTCCGGAAGGGATGCATATTGGAGGCCATGAAACGATATGATGATGCTTTAGCTTCCTTTCAGATTGCTTCGCAGTATAACCCACAAAGTCAAGAAGTATCAAGAAAGATAAAGAAGATAAACCAACTAGTGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCGAATGTTGACATGGCCAAACATTTAGATACATTGAAACCTGAAATGTCTGAAAAGTATGGATCTGAAGAATCCTGGAAAGACATATTATCATTCCTTATTGAGACCATGGAGACCGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTCCTACCTGATAAGGAAAAGACACAGACCGATAAGTATCCCCCAATTGTGAATATCGATAAGGCCTTTGAAACACCAGAAACACACGGCAGCTGCTTTTCATTTCTTAGGCAGTATGCTGAGGAGTCTTTCTCCAAGGCAGCTTGCTTAGTGGCTGCCAAAAAGATCATTGCTTATCCACAGGTTTGGAAAGGCCAAGGATCAAGGAAATGGAAACACGCACAGAGTGATGGTTTCTTTGTTCAATTTGAGTCTCCTTCCGTGCGGAAATTGTGGTTTATTCCAAGTTCAAATGAAAAGGGACAGACACTATGCAGGGATCCAGAAGTTTTGGACATTGGTTCTCACGAAGTTGTTCCTCGCTTGTTCAAAGAAAAGACATCCAGTTCTTAA 975 0.4041 MAETKEGSSSEMSLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQEVSRKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTLKPEMSEKYGSEESWKDILSFLIETMETAVKSWHETSSVDARVYFLPDKEKTQTDKYPPIVNIDKAFETPETHGSCFSFLRQYAEESFSKAACLVAAKKIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSVRKLWFIPSSNEKGQTLCRDPEVLDIGSHEVVPRLFKEKTSSS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01572 324 Pfam TPR repeat 18 58 - -
Trre2g01572 324 Gene3D Tetratricopeptide repeat domain 3 163 IPR011990 GO:0005515
Trre2g01572 324 FunFam serine/threonine-protein phosphatase 5 10 124 - -
Trre2g01572 324 SMART tpr_5 79 112 IPR019734 GO:0005515
Trre2g01572 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Trre2g01572 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Trre2g01572 324 Coils Coil 51 71 - -
Trre2g01572 324 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Trre2g01572 324 PANTHER TPR REPEAT CONTAINING PROTEIN 1 319 - -
Trre2g01572 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01572 Trre-Chr2 12677592 12683063 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01572 7 122 U-box Gene Family AT3G07370 27.119 2.09e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01572 - - gmx:100790717 587.415