Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01561 ATGCCTTTGAGGCAAATGAAAGAGAGTTCAGAACAACATCTAGTGATAAAACCTCAGTTACAAAACAGTATGAATCATCAAAATCAAGTTAAGAAAGTTACTAAAGCTGTTCAAAATGGTAAAGGTTCATCATTGTTGTTACAAGAACAACAAAACCAAACTTCACCACCATCACCTCAAGTAAAGAGTGGTAGTGGTGGTGGAAGGAGAAGGAGTAGAAATGGTAGAAAATTTGATCAAGTTGATGTTCTGATGAGACCAAGTTGTAGACCTTGTACTATTGTGAAAAATAATGAAAATGGTCTTGTTGAAAATGGAAGTATAATCTCTTCTAGTGATGTTGAGATGAGTACTTTTCCTACTTCAAGTAAGTCTTTGAGTTTTGCTCAAAGACCTGGTTATGGACAAGTTGGTACAAAATGCATTGTTAAAGCCAACCACTTCTTTGCAGAATTACCAGACAAAGACTTGAATCAGTATGATGTAACTATTACACCTGAAGTGTCGTCCAAAGCAGTTAACAGATCCATTATAGCAGAACTTGTGAGGCTGTATAAAGAATCTGACCTTGGCACGAGGCTTCCAGCATATGATGGAAGAAAAAGTCTGTACACGGCGGGGGTTCTTCCCTTTTCGTGGAGAGAGTTTAAGATTAAGCTTATCGAGGAAGAGGACGGAATTAATGGCCCCAAAAGGGAAAGAGAATACAAAGTTGTGATCAAGTTTGTTGCGAGGGCTAACTTGCATCACCTGGGGCAGTTTCTAGCTGGAAAGCGTGCGGATGCTCCACAGGAGGCAATACAAATTCTTGACATTGTACTAAGAGAGCTAGCATCTAAGAGGTTTTGTCCCATTGGGAGGTCCTTTTATTCACCTGATATTCGAACACCACAACGGCTCGGAGAAGGATTGGAGTCCTGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGTCTTTCCCTCAATATCGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCGGTTGTGGAATTTGTCGGCCAGCTATTGGGAAAAGATGTGCTGTCAAGGCAGTTGTCTGATGCGGATCGTATCAAGATTAAGAAATCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTTAGACGAAAGTATCGTGTTTCTGGTATAACGTCTCAACCAACAAGAGAACTTGTGTTTCCCGTCGATGAGAACTCGACTATGAAGTCGGTGGTTGAATACTTCCAAGAGATGTACGGTTTCACTATTAAACATACACACCTTCCTTGCCTTCAAGTTGGTGGAAATCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTCGAGGGGCAACGATATACTAAAAGGTTGAATGAAAAGCAAATTACTTCTCTCTTGAAAGTTACATGCCAGAGACCTCGTGATCGAGAAAATGACATTTTGCGGACGGTTCAGCACAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATCAAAGTCAGCGAGAAGTTAGCTTCGGTGGAAGCACGAATTCTTCCCGCTCCTTGGCTTAAGTATCACGAGAGTGGAAAAGAAAAAAATTGTTTACCTCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACCGTTAGCCGCTGGGCATGCATAAATTTTTCACGAGGCGTGCAGGACAGTGTGGCTCGTACTTTTTGTAACGAGCTTGCGCAAATGTGTCAAGTATCTGGCATGGAATTTAATCTGGAGCCTGTTATCCCGATCTACAATGCAAAACCCGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCGTCGAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGTAATATTGCCGGACAACAATGGTTCTCTCTATGGCGATCTCAAGCGTATTTGCGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTTAAGATCACTAAGCAGTACTTAGCCAATGTATCTCTGAAGATCAACGTTAAGATGGGTGGTAGAAACACTGTTCTTGTTGATGCGGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCGACAATAATATTTGGAGCAGACGTTACCCATCCTGAAAATGGAGAAGACTCCAGCCCCTCAATAGCAGCTGTGGTAGCGTCACAAGATTGGCCTGAAGTTACAAAGTATGCAGGTTTAGTTTGTGCTCAACCTCAAAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATCAGAGATTTGTTGGTTTCGTTTAGAAGGGCAACCGGACAGAAGCCACAAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGACAGTTTTACCAAGTTCTACTATACGAGTTGGATGCAATTCGGAAGGCGTGTGCTTCTTTGGAGCCAAACTATCAACCACCAGTAACTTTCATAGTTGTACAAAAACGACATCATACTCGGTTATTCGCAAACAACCACAGGGACAGAAACAGCACTGATCGGAGTGGAAATATCCTGCCTGGAACCGTTGTTGATACCAAAATCTGTCACCCAACGGAGTTTGATTTTTATCTCTGCAGTCACGCTGGCATCCAGGGTACAAGTCGTCCAGCGCATTATCATGTTCTATGGGATGAAAATAACTTCACAGCAGACGGAATTCAGTCTTTGACAAACAATCTATGTTATACATATGCCAGATGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACACTTAGCAGCTTTTCGAGCCCGCTTCTACACGGAGCCAGACCTACAGGAGACTGGCTCCAACGGCGGTCGTGGTTCAAAAACAACACGTGCAGCTGGTGATTGCGGTGTCAAGCCATTGCCAGCTTTGAAGGAAAATGTGAAGAGAGTCATGTTTTATTGTTAG 2967 0.4233 MPLRQMKESSEQHLVIKPQLQNSMNHQNQVKKVTKAVQNGKGSSLLLQEQQNQTSPPSPQVKSGSGGGRRRSRNGRKFDQVDVLMRPSCRPCTIVKNNENGLVENGSIISSSDVEMSTFPTSSKSLSFAQRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGTRLPAYDGRKSLYTAGVLPFSWREFKIKLIEEEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEAIQILDIVLRELASKRFCPIGRSFYSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKSLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRGVQDSVARTFCNELAQMCQVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPDLQETGSNGGRGSKTTRAAGDCGVKPLPALKENVKRVMFYC 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01561 988 CDD PAZ_argonaute_like 335 450 - -
Trre2g01561 988 ProSiteProfiles PAZ domain profile. 336 451 IPR003100 GO:0005515
Trre2g01561 988 FunFam Protein argonaute-2 329 456 - -
Trre2g01561 988 SMART DUF1785_2 283 335 IPR014811 -
Trre2g01561 988 FunFam Argonaute 10 515 688 - -
Trre2g01561 988 Pfam PAZ domain 359 467 IPR003100 GO:0005515
Trre2g01561 988 Pfam Argonaute linker 1 domain 284 333 IPR014811 -
Trre2g01561 988 CDD Piwi_ago-like 495 945 IPR045246 -
Trre2g01561 988 MobiDBLite consensus disorder prediction 12 67 - -
Trre2g01561 988 SUPERFAMILY PAZ domain 330 491 IPR036085 GO:0005515
Trre2g01561 988 Pfam Mid domain of argonaute 534 611 IPR032473 -
Trre2g01561 988 Gene3D - 694 988 IPR036397 GO:0003676
Trre2g01561 988 MobiDBLite consensus disorder prediction 1 78 - -
Trre2g01561 988 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 117 945 - -
Trre2g01561 988 Pfam N-terminal domain of argonaute 140 274 IPR032474 -
Trre2g01561 988 Gene3D paz domain 329 455 - -
Trre2g01561 988 ProSiteProfiles Piwi domain profile. 625 946 IPR003165 GO:0003676
Trre2g01561 988 FunFam protein argonaute 10-like 694 988 - -
Trre2g01561 988 SMART Piwi_a_2 625 946 IPR003165 GO:0003676
Trre2g01561 988 SUPERFAMILY Ribonuclease H-like 617 946 IPR012337 -
Trre2g01561 988 Gene3D - 515 688 - -
Trre2g01561 988 Pfam Argonaute linker 2 domain 477 523 IPR032472 -
Trre2g01561 988 SMART PAZ_2_a_3 340 473 IPR003100 GO:0005515
Trre2g01561 988 Pfam Piwi domain 626 944 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01561 Trre-Chr2 12567315 12573311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01561 1 988 Eukaryotic Initiation Factors Gene Family AT5G43810 80.639 0.0 1651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01561 K11593 - gmx:100816999 1763.43