Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01549 ATGAGATTAACCAAATTGCACAGGGACAATGATTTGCACAGGTTACTTTTCATGCCTAATGGCCTTCCAGACGGAGAAGGAGGATCACAAGTAGAAAAAGATGATGATGATGATGAAGAAAATAAGGTAGGAAGAGGACAAGTAGATGCTTGCGTTATGAGTGTTTACAGAGCTCGCGATCTTGAAACTAACAAAATTGTTGCTTTGAAGAAGGTTAAATTCACTAATATAGATCCTGAAAGTGTTCGTTTTATGGCAAGAAAAATCATTCTCCTAAGAAGGCTTGATCATCCAAATGTCATGAAACTTGAAGGAATGATTACTTCAAAGCTTTCTGGTAGCTTGTACCTTATTTTCGAATATATGGAACATGATCTTACTGGCCTTTCAACAATGCCTGCCAACAAGATTACTCAACCACAGATCGGCTCAGATGCTCTCCCTTTCAGAAGTGCTTTCAGAGATGTCATTTTTCGGCAAAGATGGGATTCAAGCATCATTAAAACTACAGGAGTCAACCGCATCAATCTTGAACCAGAAGCGGAGTCCATTCTCGTCCAATTCAAAGTTTTCTGCCCCAATATTATCAGTGAGGCCTACTTATGA 606 0.3927 MRLTKLHRDNDLHRLLFMPNGLPDGEGGSQVEKDDDDDEENKVGRGQVDACVMSVYRARDLETNKIVALKKVKFTNIDPESVRFMARKIILLRRLDHPNVMKLEGMITSKLSGSLYLIFEYMEHDLTGLSTMPANKITQPQIGSDALPFRSAFRDVIFRQRWDSSIIKTTGVNRINLEPEAESILVQFKVFCPNIISEAYL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01549 201 ProSiteProfiles Protein kinase domain profile. 37 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01549 201 MobiDBLite consensus disorder prediction 18 44 - -
Trre2g01549 201 FunFam probable serine/threonine-protein kinase At1g54610 28 123 - -
Trre2g01549 201 Gene3D Phosphorylase Kinase; domain 1 38 137 - -
Trre2g01549 201 SUPERFAMILY Protein kinase-like (PK-like) 54 131 IPR011009 -
Trre2g01549 201 PANTHER CELL DIVISION PROTEIN KINASE 53 132 - -
Trre2g01549 201 Pfam Protein kinase domain 40 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01549 Trre-Chr2 12472439 12474610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01549 49 142 Core Cell Cycle Gene Families AT5G10270 37.615 1.01e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre2g01549 Pkinase 1.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01549 - K08819 cam:101495256 155.221