Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01543 ATGAATCGACCCACAACAACAGTTCAAACTGCCAAAAATGCTCATGATGCTTTGGTCACTCTTCGAGCTAATGAAGGCTTGTTTGACATCATCATTACAGAATTCCATGTATCAGGAATGAATGGCTTTGATTTTCAAAAGCACATTCAAAATCAATTCCAAGTTCCTGTAATAATGATGTCCAAAGACAATCGGCAACATATAATATCTAAGACATTAGAAAATGGAGCAACACATTTTATTGTGAAACCTGTTTGTGCTGAAGACTTCGACGATATTCAGAAGTATGTTGTTGAAGCAAAGAAACATAAATTATTTATTGATAATTTATTTGCAATAAGTGATGAAGAAGAGTCAAGTGAGCAGCCCAATACAAAGAAAGAAGATTGCAAGAGAAAGAGTATTGATGAGTCTTCAGGAGGAGAAGAAAAATATCGACTTGTTAAGAAATCATCAAGGCTTGTTTGGACAAATGAGCTTCATAATTTATTTCTTGATGCTATCAAGAAAGTTGGATTGAAAAAGGCTGTTCCAAATAAAATTCTCGAAATCATGAACATACCCAACTTGACAAGAGCACATGTAGCCAGTCACTTGCAGAAATATCGCTTAAATATGGACGACAAAGTCGCTGAGAAACGAACGATTGGAGACATATCTCATAGAGCTCTAAGGTCAACACTTGCATCAAATCTTCCAACTTCGATGATCAGAGAAATTCAAGAAATGAGAACAGAAAAACTCCGTGCACCAACATTATATCAAATAGGAGCTGAAAATAATGTTTTTAACATTTTCAACAATTTTCCAAGCAACCAAAATGAATTTCCTTATTTACAAAAACCAAGACTGGAAACTAATGGTTTTGCTAATACTAGTTTTTCATCATATGGATCTAGACAAGGATTGATGGCTGCTTCTTCTTCTTCTTCTTCTGCAAATTTCTTAAAAAGGGATTTTCAATTTGGTGAAACGAGTAACCAAAATCATGGTTCAATTGGAAATGGTTATTTTAATCATATTAACCATGGAGTGAAAAATTGGAACTTGGAATCTATGAACAACTCCAGCATTTTGGCTCAGAATGTTACTTGTGATGCAAGAAATAATAACCCTTTTGGAATAAAAATCAATAACATATCTGAAATGGATGGAATTGGAACAATGAGTAAAAGAGGGTTTGATAGTATTGGTATAAGGGATGATAATGCAAATAGCTATAACTTTGGACTCAATGGTTGGGGTCAAAATGCAAATGTTAATTTTGGATCTTTGGGGCATGAAAACTTTGGTTTGATTCAAGGAGATTTTGGTTCTGTTTCTTATGTTAGGGGTGGGAGTGGAAGTGAATTTCAAGATGAATTGTTTCAAGGAAAAGTGTATGAAAACAGAAAAATTCCTCTACAAAAATTAGATAGAAATATTGTTGAAACTGAGCAGAACCATAGTGGTGGTACTTCCACCAATGCTGTCGAGTTCAACCAAATGGAATTTGACATTTCCAACTTCTCGATGACTGGTGACATGGAACTTCTTAATAAGATGAATGAAAACAATGATGCAAGTGCATTTTTGAAATCTGATCTTATTAATTCAATTCAAGATGTGCAACCCCTTGATCAGTTATATAATGGTGGTGGTGATGCATCTCTAGTTGGAAACATATCATGTGTGCTGAATGAGTCACCAATAAGTGTAAACCAAAACTGCATGCAGTTGCAAGGAAATGAACAAGTTTCAAATGGAATGCTTATGGGGGACAAAGTGTTTAATGCAAGTACCTCAGCTTCTAATCCGAAATCGGATATGGATCTTTTTGAAGCTGTGTTTGGTACTATAGACAACTAG 1848 0.3474 MNRPTTTVQTAKNAHDALVTLRANEGLFDIIITEFHVSGMNGFDFQKHIQNQFQVPVIMMSKDNRQHIISKTLENGATHFIVKPVCAEDFDDIQKYVVEAKKHKLFIDNLFAISDEEESSEQPNTKKEDCKRKSIDESSGGEEKYRLVKKSSRLVWTNELHNLFLDAIKKVGLKKAVPNKILEIMNIPNLTRAHVASHLQKYRLNMDDKVAEKRTIGDISHRALRSTLASNLPTSMIREIQEMRTEKLRAPTLYQIGAENNVFNIFNNFPSNQNEFPYLQKPRLETNGFANTSFSSYGSRQGLMAASSSSSSANFLKRDFQFGETSNQNHGSIGNGYFNHINHGVKNWNLESMNNSSILAQNVTCDARNNNPFGIKINNISEMDGIGTMSKRGFDSIGIRDDNANSYNFGLNGWGQNANVNFGSLGHENFGLIQGDFGSVSYVRGGSGSEFQDELFQGKVYENRKIPLQKLDRNIVETEQNHSGGTSTNAVEFNQMEFDISNFSMTGDMELLNKMNENNDASAFLKSDLINSIQDVQPLDQLYNGGGDASLVGNISCVLNESPISVNQNCMQLQGNEQVSNGMLMGDKVFNASTSASNPKSDMDLFEAVFGTIDN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01543 615 Gene3D - 148 208 - -
Trre2g01543 615 ProSiteProfiles Response regulatory domain profile. 1 98 IPR001789 GO:0000160
Trre2g01543 615 Pfam Response regulator receiver domain 7 89 IPR001789 GO:0000160
Trre2g01543 615 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 285 IPR045279 GO:0009736
Trre2g01543 615 MobiDBLite consensus disorder prediction 119 137 - -
Trre2g01543 615 SUPERFAMILY Homeodomain-like 149 207 IPR009057 -
Trre2g01543 615 SUPERFAMILY CheY-like 7 99 IPR011006 -
Trre2g01543 615 MobiDBLite consensus disorder prediction 117 137 - -
Trre2g01543 615 FunFam Two-component response regulator 147 209 - -
Trre2g01543 615 Pfam Myb-like DNA-binding domain 155 203 IPR001005 -
Trre2g01543 615 Gene3D - 2 107 - -
Trre2g01543 615 NCBIfam myb-like DNA-binding domain, SHAQKYF class 152 205 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01543 Trre-Chr2 12360328 12365233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01543 17 220 Response Regulator Gene Family AT3G16857 32.340 6.41e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre2g01543 Response_reg 3.1e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01543 - K14491 psat:127115658 439.884