Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01542 ATGGTTGGAATAGAACTCATACCAATAGGTACAATTTTAGCTGTTCTAACCAGCCAGGTTGTGAAAACAGCGAATGCAGCAATCGATGTTCTTGTCGAAAAAGAAAGTTTTAATGTCCTTTCAAAACACCTTCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCACAAGCTGCAAGGGTTGCTCTTGAGTCTCTTGAATCAGATGTAAAAAAAGCAAGTAATTTGGTCGAGAAGTATAAAAACCGCGGCCGTTTTTACTTACTTATGAAGTGTCGATACATAGTTAAGGAGGTTGAACAGGTCATTAGGGATATCGGAAGTTCTCTGGCTGCACTGTCTCTCGCAAATACCGAAGTCCTATCAAGAATTTCGGATCAAGTCAACAGATTACAGAGCGAGATGCAAAGAGCGGAGTTTGAAGCTTCACAGTCTCAGCTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAATTAGATCAAGCTTTTGCGAACGATATGCTTGAGGAGATAGCGAGGGCAGTTGGGGTGCCGGTGGAGCCTTCAGAGATCAGTAAAGAGATAGCCAGCATTAGATGGGAAAAAGAAGAAGCTGCTAACAGGAAAGAAAGAGCAGAAGTTATTTTTTTGGAGCAGATTATTTTGCTACTCTCTCAAGCTGATGCTGCAAGGGATTACGAAGAAGTTAAGAAACAATACTTTAAAAGGGTTCAGGTAATAGAGCGATATGGCTCGAGAGAAAGATATATTCCACCGCTTAATTCTTTCCTTTGTTCGATAACCGGAGAAGTTATGGTAGATCCTGTTAGTCTTTGCACTGGTACTACATGTGAGAGATCTGCCATCGAAGTTTGGTTTGATGATGGAAACTTGACTGATCCCAAAACAGAAGAGGTTCTTGAAGATACTACCTTAAGATCGAATGTTCGATTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGTTTTAGAATAAAGTCTATCAGGGAAAACTTATTATCTAATTCTGACTTATTGTTGAAAGAGTCCTTGAGCCAGATGCAGGATCTTATAAGCGAGAACTCAATTAACAAGGATTGGATTTCTATAGGAGAGCTTACCGATACTATTATCTCTATCCTTGGGAACTCTGATTCGACAGATGTCAAGATGAAGATCTTGATTACTTTGAAGGATGTTGTAGAGGGACATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGGTGGGGTCACATTATTTCCTGCTTACAGAATGGCTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTACTTCAAGACCGTTCTGGCTGGAATAGAAGTTTCTGCAAAAGGCTTTCTGAGCATCCCAGCGCAATTCTTTACCTTGTTACCATTCTAAAGGAACCTATCAGTGATTCATCTGGGATTGCCGAAAAGATTCTGATGGAGCTTTTTGAAATAGATGAGGAAAATGTTTCTTGTGCTGCTAAGTTTGGCTGGTACAAAGAGCTTGTTGATCGCATTATTCAAGGATCGGAGTCTTCAAGAATCTCAATGGTTAAAGCCATGATTAATTTGGAATTGGAAGAATCAAACTTGAAACTCCTTGGCGAGCAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCTGGAAGCATTGAATTGAAAGAATTGTCATTATCAGCATTGGTCAAACTAGCAGGAGTTCATGCCAATAAGGGAATTATTGCTGCATATGGAGGTGTCCCTCTTGTTCTAGATTTAATGTTCTCTCGCAGGACACGAGCGTTCATTACCATTAAATGCTTTGAAATACTTGAGAGGCTTTCATCTGATGATGATGGAATTGATTTCTTCGTTGATGGAGAAGGGAAACAACTCGAGTTAGATAACATTATCACCGATTTGCTAGCTCTACAGCAGCTTCCTAACTCAGTTCACTACTTCCGTAAGCCTGCATTGCGCGCTCTTCTTGGCATTTGTAAGTTTGAAACAGGTTTAGTTAAGAAGGCGGTTTTGGCAGCGAATGGTGTATCGCAAATTCTTCCCCTTCTTGATGACTCTGACTCAGAAATCAGGGAAACTGCCATATGTCTTCTTTTTCTTTTCTCTCAACATGAACCAGAAGGAGTTGTCGAATACCTCTTCAGGCCGAGAAGACTCGAAGCTTTAGTCGGGTTTCTTGAGAATGATGAAAATAATGATGTACAAGTAGCTGCTGCTGGTTTACTTGCCAACCTTCCTAAATTCGAACGAAAACTCACTATGCAATTAATCAATTTAGGTGGCCTTGATGCAATCATAAACATTTTGAAAAATGGTACAATGGACGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTTACAGATCCAACAGATATTGAGTCACAGCGTGATTTGGTTAAACGGGGAATATATCCTTTGCTAGTAAATTTTCTCAATACTGGTTCGGTGACAGCAAAGGCAAGAGCAGCAGCATTCATCGGTGATCTTTCAATGAGCACTCCAAAGCTCACAGTTGCCTCAAAATCAACCTTTTCCTGGTGTTTTACATCATCTCGAGCTTCTTTATGTTCGGCACACGGAAGCATTTGCAATGTGAATTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGTCTGGTTTGATAAAGCTTCTACAGGAGGAAGTTCATGCAACTGCTTATGAGGCTATACAAACACTTTCCACATTGGTTTTGGAAGACTTTCCTCAAAGAGGAGCTCGTGTCTTGCACGAGTCGAATGCAATGAGACCGTTATTGAAAATTTTGAACTGGGGAAGTGATTCTCTCAAGGCTGAAGCTCTAGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGATTACTATGGATCAACGGCTAGATTACGTCTATTTGGTCTTACCGGCATGAATGTATATGGTGATGGCCACCTAAGGAGAAAGGCTGCAAGGGTACTGTCATTGCTTGAACGCTATTCGAGGACAAGGTCGTCATCATCTTCAATCACTGCAGTTGTTAGTGAGAATCTACTCTATAAGTAA 3075 0.4033 MVGIELIPIGTILAVLTSQVVKTANAAIDVLVEKESFNVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKASNLVEKYKNRGRFYLLMKCRYIVKEVEQVIRDIGSSLAALSLANTEVLSRISDQVNRLQSEMQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANDMLEEIARAVGVPVEPSEISKEIASIRWEKEEAANRKERAEVIFLEQIILLLSQADAARDYEEVKKQYFKRVQVIERYGSRERYIPPLNSFLCSITGEVMVDPVSLCTGTTCERSAIEVWFDDGNLTDPKTEEVLEDTTLRSNVRLRESIVEWRELNYCFRIKSIRENLLSNSDLLLKESLSQMQDLISENSINKDWISIGELTDTIISILGNSDSTDVKMKILITLKDVVEGHARNKEKVVESQGWGHIISCLQNGSRISKEAIDLLYELLQDRSGWNRSFCKRLSEHPSAILYLVTILKEPISDSSGIAEKILMELFEIDEENVSCAAKFGWYKELVDRIIQGSESSRISMVKAMINLELEESNLKLLGEQGVIPPLLEMLSGSIELKELSLSALVKLAGVHANKGIIAAYGGVPLVLDLMFSRRTRAFITIKCFEILERLSSDDDGIDFFVDGEGKQLELDNIITDLLALQQLPNSVHYFRKPALRALLGICKFETGLVKKAVLAANGVSQILPLLDDSDSEIRETAICLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDENNDVQVAAAGLLANLPKFERKLTMQLINLGGLDAIINILKNGTMDAKENALSALFRFTDPTDIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVASKSTFSWCFTSSRASLCSAHGSICNVNSTFCLLEANALSGLIKLLQEEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAMRPLLKILNWGSDSLKAEALGLLEKVFVSKEMVDYYGSTARLRLFGLTGMNVYGDGHLRRKAARVLSLLERYSRTRSSSSSITAVVSENLLYK 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01542 1024 Coils Coil 69 89 - -
Trre2g01542 1024 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Trre2g01542 1024 CDD MLKL_NTD 18 142 - -
Trre2g01542 1024 Gene3D - 335 649 IPR011989 -
Trre2g01542 1024 SUPERFAMILY ARM repeat 335 719 IPR016024 -
Trre2g01542 1024 SUPERFAMILY ARM repeat 647 1002 IPR016024 -
Trre2g01542 1024 SMART arm_5 673 713 IPR000225 GO:0005515
Trre2g01542 1024 SMART arm_5 759 799 IPR000225 GO:0005515
Trre2g01542 1024 SMART arm_5 919 959 IPR000225 GO:0005515
Trre2g01542 1024 SMART arm_5 875 915 IPR000225 GO:0005515
Trre2g01542 1024 SMART arm_5 408 447 IPR000225 GO:0005515
Trre2g01542 1024 SMART arm_5 802 842 IPR000225 GO:0005515
Trre2g01542 1024 SMART arm_5 537 576 IPR000225 GO:0005515
Trre2g01542 1024 SMART arm_5 715 757 IPR000225 GO:0005515
Trre2g01542 1024 SUPERFAMILY RING/U-box 247 331 - -
Trre2g01542 1024 Coils Coil 127 154 - -
Trre2g01542 1024 Gene3D - 853 998 IPR011989 -
Trre2g01542 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 334 IPR013083 -
Trre2g01542 1024 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Trre2g01542 1024 CDD RING-Ubox_PUB 265 314 IPR045210 -
Trre2g01542 1024 Gene3D - 9 123 IPR036537 GO:0007166
Trre2g01542 1024 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Trre2g01542 1024 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Trre2g01542 1024 Gene3D - 650 852 IPR011989 -
Trre2g01542 1024 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01542 Trre-Chr2 12347314 12350926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01542 69 959 U-box Gene Family AT1G68940 22.490 3.71e-35 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01542 - - gmx:100816935 1611.28