Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01539 ATGGAACGGCGGCAACAATCGCCACCGTCTCCACCGCCGTCACGAATCATCCTTGGTAAATACCAACTAACAAAGTTTCTCGGACGCGGAAACTTCGCAAAAGTATACCAAGCACGTTCACTCATCGACGGTTCAACCGTTGCCGTAAAAGTAATCGACAAATCCAAAACTGTCGATGCATCAATGGAGCCACGAATTGTTCGAGAAATCGACGCTATGCGCCGACTTCAAAATCATCAAAATATTCTCAAAATCCATGAAGTTTTAGCCACGAAAACTAAGATCTACCTTATCGTTGATTTCGCCGGTGGCGGTGAACTTTTCAATAAACTTTCCCGACGAGGTAGGTTTCCGGAGTCATTAGCTCGTCGCTACTTTCAACAACTCGTTTCCGCTCTCTGTTTCTGCCACAAAAACGGCGTCGCTCACCGTGATCTCAAACCGCAGAATCTTCTCCTCGACGCCGACGGTAATCTCAAGGTTTCCGATTTCGGTCTCTCGGCTTTACCGGAGCAGTTAAAAAACGGTCTCCTTCATACAGCTTGCGGTACGCCGGCGTACACCGCACCGGAGATTCTCGGTCGGATCGGTTACGACGGATCTAAAGCTGACGCCTGGTCGTGCGGCGTAATTCTATACGTTCTTCTCGCCGGTCATCTTCCGTTCGATGATTCAAATATTCCGGCGATGTGTAAGAGAATTACTCGCCGGGATTATCAGTTTCCGGCGTGGGTTTCGAAACCAGCACGTTACCTGATTTATCAATTACTTGACCCGAATCCAAAAACAAGAATTAGGTTAGAAAACGTAATTGGAAACACTTGGTTTAAGAAATCGTTAAGAGAAGAACCTGAAGAGAAAGTTTTTGAATCTGATTTATACAACAAATACTGTTGTGATAGTAAGAAAGTTGAATTTGGGATGAATGCTTTCGATATAATATCGATGTCTTCGGGTTTAGATTTGAGTGGTTTGTTCGAAACGGCTTCGATTAGGAGTGAAAAGAGGTTTACTTCTAGTGAACAAGTTGTTGTGGTGGAAGAGAAAGTGAAGGAAATTGGAGTGAGATTAGGGTTTAGGGTTGAGATTGGGAAAAATGGTACAATTGGGTTAGGGAAAGGGAAAGTTACTATGGTTGTTGAGGTTTTTAAGATTGTAGATGATTTGTTGTTGGTTGCTCTTAAATTGGAGAGTGGTGGATTAGAATTTGAAGATCTTCATTGGAATGATTGGAAAATTGGGCTTCAAGATGTTGTTCTTTCTTGGCATAATCATGAATCCAACTTGAAAATATGTCATGTTGGTGATTTTTGA 1314 0.4292 MERRQQSPPSPPPSRIILGKYQLTKFLGRGNFAKVYQARSLIDGSTVAVKVIDKSKTVDASMEPRIVREIDAMRRLQNHQNILKIHEVLATKTKIYLIVDFAGGGELFNKLSRRGRFPESLARRYFQQLVSALCFCHKNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILGRIGYDGSKADAWSCGVILYVLLAGHLPFDDSNIPAMCKRITRRDYQFPAWVSKPARYLIYQLLDPNPKTRIRLENVIGNTWFKKSLREEPEEKVFESDLYNKYCCDSKKVEFGMNAFDIISMSSGLDLSGLFETASIRSEKRFTSSEQVVVVEEKVKEIGVRLGFRVEIGKNGTIGLGKGKVTMVVEVFKIVDDLLLVALKLESGGLEFEDLHWNDWKIGLQDVVLSWHNHESNLKICHVGDF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01539 437 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01539 437 Gene3D Transferase(Phosphotransferase) domain 1 107 300 - -
Trre2g01539 437 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Trre2g01539 437 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Trre2g01539 437 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01539 437 FunFam Non-specific serine/threonine protein kinase 13 301 - -
Trre2g01539 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 365 - -
Trre2g01539 437 Gene3D Kinase associated domain 1, KA1 306 420 - -
Trre2g01539 437 Pfam NAF domain 308 362 IPR004041 GO:0007165
Trre2g01539 437 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01539 437 SUPERFAMILY Protein kinase-like (PK-like) 17 288 IPR011009 -
Trre2g01539 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Trre2g01539 437 CDD CIPK_C 309 416 - -
Trre2g01539 437 FunFam Non-specific serine/threonine protein kinase 14 106 - -
Trre2g01539 437 Gene3D Phosphorylase Kinase; domain 1 23 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01539 Trre-Chr2 12310440 12311753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01539 4 424 Miscellaneous Gene Families AT3G23000 58.645 1.31e-174 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre2g01539 Pkinase 2.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01539 K12761 - gmx:100305372 652.899