Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01532 ATGATCTCAAAACCAAGCAACATCACTTCACCTTCATCCCCTTTAGTCCCTAATCAACCCCTTTTAATCCCTTTAACTTGTTCTTGCAATTTCATCAACACCACTTTTGGTTCAATCTCTTACTCCAACATCACTTACACTATAAAATCAGGTGATACTTTTTTCCTTGTTTCAACCATAAACTATCAAAACCTCACTACTTATCCTTCTGTTGAAGTTGTTAATCCTAATCTTGTTGCTACTAATCTCTCTGTTGGTGATAATGTTATTTTCCCTATTTTTTGTAAATGTCCTGATAAAACCAAAACAAATTCAAGTTTCATGATTTCTTATGTTGTTCAACCTTTTGATAGTGTTTCATCAATTGCTTCAATGTTTGGAACAACTGAAAAGTCTATAGTTGATGTTAATGGTGAAAAATTGTATGATTATGATACAATTTTTGTTCCTGTTAATAAATTACCTGTTTTGAAACAACCTAGTACTATTGCTCCTTCTCCTCCACCAAGTGGAAATTTTGATGATGGTGGTGATGATGATGATAAGAGTGGAACTGTTAGAGGGTTAGCTATTGGATTGGGAATTTTAGGGTTTTTGTTGATTTTGGTTTTAGGGATTTGGTTTTATAGAGGTGTTTTTGGTAAGAAGGAAAAGAAAGGGAGAGATATGTATTTGGGAGAGAAAGGGTATAAAGGGAATAATAATAATGATAATAAGAAGAAACAAATGGATGTGAATTTTATGGCTAATGTTTCTGATTGTTTGGATAAGTATAGAGTTTTTGGATTTGATGAATTAGTTGATGCTACTAATGGGTTTGATGAAAGTCATTTGATTCAAGGGAGTGTTTATAAAGGTGTAATTGATGGACAAGTTTATGCAATTAAGAAGATGAAATGGAATGCTTATGAGGAGCTCAAAATCTTGCAGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAAGGATTTTGCATAGAACCAGAAGAATCAAATTGTTATCTAGTCTATGAATATGTTGAAAATGGATCTCTCTACTCATGGCTACATGAAGAGAAAAACCAAAAGCTAAATTGGATAACAAGGCTAAGAATAGCCATTGACATTGCCAATGGTTTATTATACATTCATGAACACACAAGACCAAAAGTTGTACATAAAGACATCAAAAGTAGCAACATTCTCTTGGACTCAAACAAGAGAGCTAAAATTGCGAATTTTGGACTTGCAAAGAGCGGAATCAATGCAATTACAATGCACATTGTTGGAACACAAGGGTACATTTCGCCCGAATATCTAGCCGACGGTATTGTGTCAACAAAGATGGATGTGTTTTCTTTTGGTGTTGTGTTGCTTGAATTGATGTCCGGAAAGGAAGTTATTGATGATGAGGGGAATGTTTTGTGGGCTAATGCTATAAAAACATTTGAAGTGAAAAATGAACAAGAAAAGGCTAGGAGACTTAAGGAATGGTTGGATAAGGCTATTTTAAAGGAGACATGTTCAATGGAAAGTTTGATGGGTGTACTTAATGTTGCAATTGCTTGTTTGCATAGAGATCCTTCAAAGAGGCCTAGCATTATTGATATTGTTTACTCACTTAGTAAATGTGAAGAGAGTGGATTTGAGCTCTCAGATGATGGGTTTAGTTCACAAAATTTGGTGGCTAGGTGA 1671 0.3447 MISKPSNITSPSSPLVPNQPLLIPLTCSCNFINTTFGSISYSNITYTIKSGDTFFLVSTINYQNLTTYPSVEVVNPNLVATNLSVGDNVIFPIFCKCPDKTKTNSSFMISYVVQPFDSVSSIASMFGTTEKSIVDVNGEKLYDYDTIFVPVNKLPVLKQPSTIAPSPPPSGNFDDGGDDDDKSGTVRGLAIGLGILGFLLILVLGIWFYRGVFGKKEKKGRDMYLGEKGYKGNNNNDNKKKQMDVNFMANVSDCLDKYRVFGFDELVDATNGFDESHLIQGSVYKGVIDGQVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIEPEESNCYLVYEYVENGSLYSWLHEEKNQKLNWITRLRIAIDIANGLLYIHEHTRPKVVHKDIKSSNILLDSNKRAKIANFGLAKSGINAITMHIVGTQGYISPEYLADGIVSTKMDVFSFGVVLLELMSGKEVIDDEGNVLWANAIKTFEVKNEQEKARRLKEWLDKAILKETCSMESLMGVLNVAIACLHRDPSKRPSIIDIVYSLSKCEESGFELSDDGFSSQNLVAR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01532 556 FunFam PTI1-like tyrosine-protein kinase 3 339 546 - -
Trre2g01532 556 Gene3D LysM domain 95 157 IPR036779 -
Trre2g01532 556 ProSiteProfiles Protein kinase domain profile. 255 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01532 556 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Trre2g01532 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672|GO:0006468
Trre2g01532 556 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 2 538 - -
Trre2g01532 556 SMART LysM_2 110 150 IPR018392 -
Trre2g01532 556 SMART LysM_2 45 92 IPR018392 -
Trre2g01532 556 Pfam LysM domain 111 149 IPR018392 -
Trre2g01532 556 SMART serkin_6 273 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01532 556 Gene3D Phosphorylase Kinase; domain 1 242 338 - -
Trre2g01532 556 SUPERFAMILY Protein kinase-like (PK-like) 257 533 IPR011009 -
Trre2g01532 556 Gene3D Transferase(Phosphotransferase) domain 1 339 547 - -
Trre2g01532 556 Pfam Protein kinase domain 281 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01532 556 MobiDBLite consensus disorder prediction 159 179 - -
Trre2g01532 556 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01532 Trre-Chr2 12231655 12235121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01532 7 535 Receptor kinase-like Gene Family AT2G23770 33.636 3.04e-73 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre2g01532 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01532 - - lang:109352405 779.63