Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01531 ATGAAAACTTTCAAATTCCACCACCACTTCTTCACTCTCATTTTCTTCCTCCTCCTACCCTTCCTTAAATCACAAACTCAAAGACAACAAAACAACACAGGCTACACTTGTAACAACAAAAACCAAACAAATATTTATCCATGTCAAACCTATGCATACTACAGAGCAACACTACCAAATTACCTCGATTTAGCTACCATTTCAGACCTTTTTTCATTAAGTCGTTTAATGATCTCAAAACCAAGCAACATCACTTCACCTTCATCCCCTTTAGTCCCTAATCAACCCCTTTTAATCCCTTTAACTTGTTCTTGCAATTTCATCAACACCACTTTTGGTTCAATCTCTTACTCCAACATCACTTACACTATAAAATCAGGTGATACTTTTTTCCTTGTTTCAACCATAAACTATCAAAACCTCACTACTTATCCTTCTGTTGAAGTTGTTAATCCTAATCTTGTTGCTACTAATCTCTCTGTTGGTGATAATGTTATTTTCCCTATTTTTTGTAAATGTCCTGATAAAACCAAAACAAATTCAAGTTTCATGATTTCTTATGTTGTTCAACCTTTTGATAGTGTTTCATCAATTGCTTCAATGTTTGGAACAACTGAAAAGTCTATAGTTGATGTTAATGGTGAAAAATTGTATGATTATGATACAATTTTTGTTCCTGTTAATAAATTACCTGTTTTGAAACAACCTAGTACTATTGCTCCTTCTCCTCCACCAAGTGGAAATTTTGATGATGGTGGTGATGATGATGATAAGAGTGGAACTGTTAGAGGGTTAGCTATTGGATTGGGAATTTTAGGGTTTTTGTTGATTTTGGTTTTAGGGATTTGGTTTTATAGAGGTGTTTTTGGTAAGAAGGAAAAGAAAGGGAGAGATATGTATTTGGGAGAGAAAGGGTATAAAGGGAATAATAATAATGATAATAAGAAGAAACAAATGGATGTGAATTTTATGGCTAATGTTTCTGATTGTTTGGATAAGTATAGAGTTTTTGGATTTGATGAATTAGTTGATGCTACTAATGGGTTTGATGAAAGTCATTTGATTCAAGGGAGTGTTTATAAAGGTGTAATTGATGGACAAGTTTATGCAATTAAGAAGATGAAATGGAATGCTTATGAGGAGCTCAAAATCTTGCAGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAAGGATTTTGCATAGAACCAGAAGAATCAAATTGTTATCTAGTCTATGAATATGTTGAAAATGGATCTCTCTACTCATGGCTACATGAAGAGAAAAACCAAAAGCTAAATTGGATAACAAGGCTAAGAATAGCCATTGACATTGCCAATGGTTTATTATACATTCATGAACACACAAGACCAAAAGTTGTACATAAAGACATCAAAAGTAGCAACATTCTCTTGGACTCAAACAAGAGAGCTAAAATTGCGAATTTTGGACTTGCAAAGAGCGGAATCAATGCAATTACAATGCACATTGTTGGAACACAAGGGTACATTTCGCCCGAATATCTAGCCGACGGTATTGTGTCAACAAAGATGGATGTGTTTTCTTTTGGTGTTGTGTTGCTTGAATTGATGTCCGGAAAGGAAGTTATTGATGATGAGGGGAATGTTTTGTGGGCTAATGCTATAAAAACATTTGAAGTGAAAAATGAACAAGAAAAGGCTAGGAGACTTAAGGAATGGTTGGATAAGGCTATTTTAAAGGAGACATGTTCAATGGAAAGTTTGATGGGTGTACTTAATGTTGCAATTGCTTGTTTGCATAGAGATCCTTCAAAGAGGCCTAGCATTATTGATATTGTTTACTCACTTAGTAAATGTGAAGAGAGTGGATTTGAGCTCTCAGATGATGGGTTTAGTTCACAAAATTTGGTGGCTAGGTGA 1899 0.346 MKTFKFHHHFFTLIFFLLLPFLKSQTQRQQNNTGYTCNNKNQTNIYPCQTYAYYRATLPNYLDLATISDLFSLSRLMISKPSNITSPSSPLVPNQPLLIPLTCSCNFINTTFGSISYSNITYTIKSGDTFFLVSTINYQNLTTYPSVEVVNPNLVATNLSVGDNVIFPIFCKCPDKTKTNSSFMISYVVQPFDSVSSIASMFGTTEKSIVDVNGEKLYDYDTIFVPVNKLPVLKQPSTIAPSPPPSGNFDDGGDDDDKSGTVRGLAIGLGILGFLLILVLGIWFYRGVFGKKEKKGRDMYLGEKGYKGNNNNDNKKKQMDVNFMANVSDCLDKYRVFGFDELVDATNGFDESHLIQGSVYKGVIDGQVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIEPEESNCYLVYEYVENGSLYSWLHEEKNQKLNWITRLRIAIDIANGLLYIHEHTRPKVVHKDIKSSNILLDSNKRAKIANFGLAKSGINAITMHIVGTQGYISPEYLADGIVSTKMDVFSFGVVLLELMSGKEVIDDEGNVLWANAIKTFEVKNEQEKARRLKEWLDKAILKETCSMESLMGVLNVAIACLHRDPSKRPSIIDIVYSLSKCEESGFELSDDGFSSQNLVAR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01531 632 SMART serkin_6 349 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01531 632 Pfam Protein kinase domain 357 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01531 632 Gene3D Transferase(Phosphotransferase) domain 1 415 623 - -
Trre2g01531 632 Gene3D LysM domain 171 233 IPR036779 -
Trre2g01531 632 Pfam LysM domain 187 225 IPR018392 -
Trre2g01531 632 SMART LysM_2 186 226 IPR018392 -
Trre2g01531 632 SMART LysM_2 121 168 IPR018392 -
Trre2g01531 632 MobiDBLite consensus disorder prediction 235 255 - -
Trre2g01531 632 Gene3D Phosphorylase Kinase; domain 1 319 414 - -
Trre2g01531 632 ProSiteProfiles Protein kinase domain profile. 331 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01531 632 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 614 - -
Trre2g01531 632 ProSiteProfiles LysM domain profile. 185 232 IPR018392 -
Trre2g01531 632 SUPERFAMILY Protein kinase-like (PK-like) 333 609 IPR011009 -
Trre2g01531 632 FunFam PTI1-like tyrosine-protein kinase 3 415 622 - -
Trre2g01531 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01531 Trre-Chr2 12231655 12235349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01531 1 611 Receptor kinase-like Gene Family AT2G23770 33.179 1.02e-83 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre2g01531 Pkinase 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01531 - - lang:109352405 859.366