Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01530 ATGGAATTCAAGGCAACTGAGCTTAGATTGGGATTACCAGGAACAGAGGAAAAGGAGAACAAAACAATGAATATTAGTGTTAAGAACAACAAAAGACAACTACCTCAAACTTCTGAGGAATCTGTTTCAATTTCTAAGGTTTCAAATGATCAACAAGTTGAGAGTTCTTCTGCTGCCCCTCCTGCCAAGGCAAAGATAGTTGGGTGGCCACCAATTAGATCTTACAGGAAAAATAGCTTGCAAGAGGCTGAAGTTGGTGGGATCTTTGTGAAAGTTAGCATGGATGGAGCTCCTTACCTTAGAAAGATTGACTTAAGGATCTATGGAGGGTACCCTGAACTACTCAAAGCTCTAGAAACCATGTTCAAGTTAACCATAGGTGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACATATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTTACTTCTTGCAAAAGGTTAAGAATCATGAAAGGAGCAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA 555 0.4054 MEFKATELRLGLPGTEEKENKTMNISVKNNKRQLPQTSEESVSISKVSNDQQVESSSAAPPAKAKIVGWPPIRSYRKNSLQEAEVGGIFVKVSMDGAPYLRKIDLRIYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGAEARGLGCGV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01530 184 SUPERFAMILY CAD & PB1 domains 78 173 - -
Trre2g01530 184 FunFam Auxin-responsive protein 82 184 - -
Trre2g01530 184 Gene3D - 81 184 - -
Trre2g01530 184 ProSiteProfiles PB1 domain profile. 87 174 IPR000270 GO:0005515
Trre2g01530 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 177 IPR003311 GO:0005634|GO:0006355
Trre2g01530 184 MobiDBLite consensus disorder prediction 1 60 - -
Trre2g01530 184 MobiDBLite consensus disorder prediction 26 58 - -
Trre2g01530 184 MobiDBLite consensus disorder prediction 1 25 - -
Trre2g01530 184 Pfam AUX/IAA family 6 181 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01530 Trre-Chr2 12224702 12226051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01530 90 180 B3 DNA Binding Superfamily AT2G46530 37.363 1.18e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre2g01530 AUX_IAA 9.9e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01530 K14484 - gmx:100800212 301.597