Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01523 ATGGATCCCTTTTATCCTGAAAATCTTTTAGGTGAAGTTTTCTTTGATGAACCTCTAGCTTCAAATCCAATGAATTTTGTTATGACACAACAACCTCTTCCTACACAAAATCCAAGTGCTTTTGTTCAATATAGAGACCAACCCAAGATTAGTTTTTTGGAAGAAAATTCAAATACCATGAACAAGAGAATGGTTGCATTTTTGAGAAAAAGTTTGCCTTTAGAGAGAAATAAAGTAGCTGAATGTGAAAGAGAACGTGGTTTCAAACACATGATTAGTGAAAGAATGAGAAGACAAAGACAAAGACAATGTTGCTCCAACTTACATTCAGTTTTACCTCATGGAACAAAAACAGATAATAACTCTGTAGTTCAAACAGCAGCTAAGGAAATTCAAAGGCTACAAGGATACAAAGATGAATTGGAGAGGAAAAATTTTGTGCTTAAAGAAAATGTTGAAGTAATTGAGGGAAGAAAACATTATTTAAGAGTGCCAAACCATGCTACATCTGGAATTATTAGTTCTATGATTGAGACACTCAAATTGTTGAAAGACCATGGTGTTGATACTACAAGCATCAAGTCCAATTTTTCTCAACAGGAGTTGTTTGCAGTCTTAGAGATTGAAACTGAGATTGCAGAAACTATTGTGGAACACATTGCAGATGAAATTGAGTGGAAGCTTCACCATAATGTCCCGGAAGGTTCTCATAAGCAAATAATATAA 726 0.343 MDPFYPENLLGEVFFDEPLASNPMNFVMTQQPLPTQNPSAFVQYRDQPKISFLEENSNTMNKRMVAFLRKSLPLERNKVAECERERGFKHMISERMRRQRQRQCCSNLHSVLPHGTKTDNNSVVQTAAKEIQRLQGYKDELERKNFVLKENVEVIEGRKHYLRVPNHATSGIISSMIETLKLLKDHGVDTTSIKSNFSQQELFAVLEIETEIAETIVEHIADEIEWKLHHNVPEGSHKQII 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01523 241 Coils Coil 124 158 - -
Trre2g01523 241 Pfam Helix-loop-helix DNA-binding domain 90 135 IPR011598 GO:0046983
Trre2g01523 241 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 29 212 IPR044658 -
Trre2g01523 241 Gene3D - 84 163 IPR036638 GO:0046983
Trre2g01523 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 134 IPR011598 GO:0046983
Trre2g01523 241 SMART finulus 91 140 IPR011598 GO:0046983
Trre2g01523 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 156 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01523 Trre-Chr2 12170665 12172550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01523 48 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 39.766 5.90e-26 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01523 HLH 4.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01523 - - gmx:100815874 240.736