Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01498 ATGAAGCTTTTACCAATGCAGTGTCTGCTATTTTATGTGTTTGTAATGGTCACATCACCTCATGCTTCAGCTGAAATCCAAGGTAGTGAGGCTAATGCTCTATTGAAGTGGAAATCAAGCTTTGACAACAAAAGTCAGGCTTTGCTCTCTTCATGGATTGGTAATAATCCTTGTAGTTGGGAAGGAATCACATGTGATGATAACTCAACATCAATCTACGAGGTAAATCTCGCCAATATTGGACTAAGAGGTATGCTTCAAAGTCTAAATTTCTTATCACTTCCAAAACTGCGCAGTTTAGTATTAAGTCACAACTCCTTCTACGGAGTTATTCCACACACATTTGGAATGATGTCCAATCTAAAAACTCTCAATTTGTCATTTAACAAACTTTCTGGAAACATTTCCAATAGCATTGGTAATATGTCCAAACTTTCCTATCTTGACCTTGGTGGTAATGCTCTCACCGGTATTATACCGGTCACAATAGAAAAGATAACCAACTTGTCACATCTTGATATTGGAGGAAACAACCTATATGGCAACATTCCTCAGAGAGTTTGGAAAATGGACCTGAAGTATTTGTCACTTGCATATAATAACTTCAATGGTTTTATCTCACAAGATATTTTCAAGTTACAAAACCTAGAGATTTTATATCTTCAAGAAAGTGGCCTTTCTGGTTCCATACCAGAGGAACTTCAGATGATGAGGAATTTGAAAGAGCTTGATATTAGTAGTTGTAATCTCACTGGATCTATCCCTATTTCAATAGGAATGTTGTCCAATATATCAAGGCTTAGGTTAGAGAACAATCAACTTTTTGGCCACATTCCTCGTGAAATTGGAAAGTTGGTTAACCTAGAGCAACTACTTCTTGATAGAAATAATCTTACTAGCTATATTCCTCAAGAAATAGGATTCCTAAAAGAACTTCGTGAAATTGATTTGGCTGTTAACCATCTCTTTGGCACAATCCCTTCTACAATTGGAAACTTGAGCAATTTGCTATCCGTTTACCTTTATAAAAACTATCTAAATGGTAGCATTCCCACTGAATTCGGACAACTCCACTCTCTTGTAACAATTGATTTGTCATTTAACAACCTCTCTGGGCCAATCCCACCATCTATAGGAAATTTAACAAATCTCCGTATCTTAACTCTTTTCTCAAATGCACTTAGTGGCAATCTTCCTACAGAAATAAATAGCCTTAGAAATTTGAAAATATTACAGTTAGGTGATAATAATTTCATTGGTCATTTACCTCACAACATTTGTGCTAGTGGAATGTTGCAACAATTCTCTGCTAGGAATAACCAGTTTACAGGCCCAATTCCAAAGAGTTTGAAGAATTGTTCCAGCCTTACAAGAGTCAGGCTTGAACAAAACAACCTAACTGGAAATATAACAGATGATTTTGGTGTGTATCCACATTTGGACTACATGGATTTGAGTGATAATAATTTATATGGTCAGCTTTCTCCAAATTGGGGAAAGTGTAACAACCTCACAAGCCTTAAAATCTCAAATAATAATTTAACAGGGAGCATACCACCAGAAATGGCCGAGGCAACCAATTTACATATAATCGACTTTTCCTTAAACCAACTTACAGGAAAAATTCCTAAGGAGCTAGGCAACTTACCTTCATTGATCCAACTCTCGATAAGTAGCAATCAACTTTTAGGAGAAGTTCCTGTTCAGATTGCATTATTGCCCGAACTAACTATTTTGGAGCTTTCAACTAATAATTTAAGTGGCTTCATCCCAGAACAATTTGGAATGTTACCTAAGTTATTGTACTTGGATTTGAGCAACAACAAATTTGAAGGAAATATTCCTTTTGAGATTGGTCAATTAAAAGTGATTGAAAATCTTGATCTTAGTGGAAACTTTTTAGATGGAACCATACCAGCAATGCTCGGACAGTTGAAATACTTAGAAACATTGAATCTCTCACATAATAATCTCTCTGGTGTCTTTCCCTTTAGCTATGGTGATATTTTAAGCTTGACAATTGTTGATATATCATACAACCAATTGGAGGGTCCAATTCCAAGCATTCCAGCCTTCCAAAAAGCCTCATTTCAATCACTGAGAAATAATAAAGACTTGTGTGGTAATATATCTGGCCTAGAGCCTTGCTTGACATCACGTGGAAACATTCTTAGTCATAAGACTAACAAAATTTTGGTGACAATATTGCCCCTCACATTAGGCGCCTTATTGTTAGCATTATTTGTTTATGGGTTGTCTTATCATCTTTGTCAAACTTCAAGCACCAAAGAGTACAAGACTGCGGAAGAATCAAATGCTACAAATATTTTTTCTATATGGAGTTTTGATGGAAAAATAGTGTATGAGAACATTATCAAAGCCACTGAAGAGTTTGACAATAACTATCTCATTGGGGTTGGTGGACATGGCAATGTTTACAAAGCAGAATTGCCTACAGGTCAAGTTGTAGCTGTGAAGAAACTCCATTCATTACAAAATGAAGAAATGTCAAATTTAAAAGCTTTTGCAAGTGAGATCCGTGCTTTGACAGAAATTCGACATCGTAACATTGTGAAGTTATATGGATTTTGTTCACATTCACTACACTCTTTTTTGGTTTATGAATTCTTGGAGAAGGGTAGTCTAGACAAAATTTTAAAAGACGATCAACTGTCAACTGAATTTGATTGGAACACAAGAGTGAATGTCATTAAAGATATAGCTAATGCTTTATGTTATATGCATCATGATTTCTCACCTGCAATTGTTCATCGCGATATATCTAGCAAGAATGTTGTTTTGGATTTGGAATATGTAGCTCATGTCTCAGACTTCGGCACAGCTAAGTTTCTGAATCCCGACTCATCCAACTGGACTAATTTTGTAGGAACATTTGGATATACTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAGTGCGATGTGTATAGTTTTGGAGTATTAACCTTAGAAATACTTCTTGGAAAACACCCTGGAGATATTGTATCAACTTATTTGTATGGTGGTGTGTGCCTAACACCTGATGGTATGTCATTGATTGATAACTTGGATCAACGTCTTTCTCATCCTACAAATGTTATCATGAAAGAAGTGGTATTAATTATAAGGAGTGCAGTTGCTTGCTTAACTGAAAGTCCGCATTCTCGCCCTACCATGAAGGAGGTTTGCAAGGAGTTTGTAACTTTAAAGTAA 3219 0.3597 MKLLPMQCLLFYVFVMVTSPHASAEIQGSEANALLKWKSSFDNKSQALLSSWIGNNPCSWEGITCDDNSTSIYEVNLANIGLRGMLQSLNFLSLPKLRSLVLSHNSFYGVIPHTFGMMSNLKTLNLSFNKLSGNISNSIGNMSKLSYLDLGGNALTGIIPVTIEKITNLSHLDIGGNNLYGNIPQRVWKMDLKYLSLAYNNFNGFISQDIFKLQNLEILYLQESGLSGSIPEELQMMRNLKELDISSCNLTGSIPISIGMLSNISRLRLENNQLFGHIPREIGKLVNLEQLLLDRNNLTSYIPQEIGFLKELREIDLAVNHLFGTIPSTIGNLSNLLSVYLYKNYLNGSIPTEFGQLHSLVTIDLSFNNLSGPIPPSIGNLTNLRILTLFSNALSGNLPTEINSLRNLKILQLGDNNFIGHLPHNICASGMLQQFSARNNQFTGPIPKSLKNCSSLTRVRLEQNNLTGNITDDFGVYPHLDYMDLSDNNLYGQLSPNWGKCNNLTSLKISNNNLTGSIPPEMAEATNLHIIDFSLNQLTGKIPKELGNLPSLIQLSISSNQLLGEVPVQIALLPELTILELSTNNLSGFIPEQFGMLPKLLYLDLSNNKFEGNIPFEIGQLKVIENLDLSGNFLDGTIPAMLGQLKYLETLNLSHNNLSGVFPFSYGDILSLTIVDISYNQLEGPIPSIPAFQKASFQSLRNNKDLCGNISGLEPCLTSRGNILSHKTNKILVTILPLTLGALLLALFVYGLSYHLCQTSSTKEYKTAEESNATNIFSIWSFDGKIVYENIIKATEEFDNNYLIGVGGHGNVYKAELPTGQVVAVKKLHSLQNEEMSNLKAFASEIRALTEIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSLDKILKDDQLSTEFDWNTRVNVIKDIANALCYMHHDFSPAIVHRDISSKNVVLDLEYVAHVSDFGTAKFLNPDSSNWTNFVGTFGYTAPELAYTMEVNEKCDVYSFGVLTLEILLGKHPGDIVSTYLYGGVCLTPDGMSLIDNLDQRLSHPTNVIMKEVVLIIRSAVACLTESPHSRPTMKEVCKEFVTLK 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01498 1072 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Trre2g01498 1072 Gene3D Ribonuclease Inhibitor 360 426 IPR032675 -
Trre2g01498 1072 SMART LRR_sd22_2 357 383 - -
Trre2g01498 1072 SMART LRR_sd22_2 309 335 - -
Trre2g01498 1072 SMART LRR_sd22_2 597 629 - -
Trre2g01498 1072 SMART LRR_sd22_2 118 137 - -
Trre2g01498 1072 SMART LRR_sd22_2 142 171 - -
Trre2g01498 1072 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 192 431 - -
Trre2g01498 1072 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Trre2g01498 1072 Pfam Leucine rich repeat 625 682 IPR001611 GO:0005515
Trre2g01498 1072 Pfam Leucine rich repeat 192 250 IPR001611 GO:0005515
Trre2g01498 1072 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Trre2g01498 1072 Pfam Leucine rich repeat 311 370 IPR001611 GO:0005515
Trre2g01498 1072 ProSiteProfiles Protein kinase domain profile. 798 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01498 1072 SUPERFAMILY RNI-like 314 688 - -
Trre2g01498 1072 Gene3D Ribonuclease Inhibitor 427 718 IPR032675 -
Trre2g01498 1072 Gene3D Ribonuclease Inhibitor 190 359 IPR032675 -
Trre2g01498 1072 FunFam Nuclear pore complex protein NUP107 27 185 - -
Trre2g01498 1072 Gene3D Phosphorylase Kinase; domain 1 757 876 - -
Trre2g01498 1072 SMART LRR_typ_2 405 429 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 261 284 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 645 668 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 597 621 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 94 117 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 118 141 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 357 381 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 142 165 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 285 309 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 573 596 IPR003591 -
Trre2g01498 1072 SMART LRR_typ_2 166 190 IPR003591 -
Trre2g01498 1072 FunFam MDIS1-interacting receptor like kinase 2 877 1072 - -
Trre2g01498 1072 SUPERFAMILY Protein kinase-like (PK-like) 777 1066 IPR011009 -
Trre2g01498 1072 PANTHER LEUCINE RICH REPEAT KINASE 2 355 1071 - -
Trre2g01498 1072 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Trre2g01498 1072 ProSitePatterns Tyrosine protein kinases specific active-site signature. 922 934 IPR008266 GO:0004672|GO:0006468
Trre2g01498 1072 Pfam Protein kinase domain 802 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01498 1072 SUPERFAMILY RNI-like 68 372 - -
Trre2g01498 1072 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Trre2g01498 1072 FunFam Leucine-rich repeat receptor protein kinase MSP1 760 876 - -
Trre2g01498 1072 Gene3D Transferase(Phosphotransferase) domain 1 877 1072 - -
Trre2g01498 1072 ProSitePatterns Protein kinases ATP-binding region signature. 804 827 IPR017441 GO:0005524
Trre2g01498 1072 FunFam Uncharacterized protein 432 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01498 Trre-Chr2 11961388 11964841 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01498 6 970 Receptor kinase-like Gene Family AT4G08850 42.843 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre2g01498 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01498 - - tpra:123910542 1190.64