Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01496 | ATGCTTCAGAATATGAAGTGTTTACCAATGTCGTGTCTTCTTTTTCTCTTTTGTAATTTGTTTGTAAATGCCACACCATTTCATGCTGCAACTAAAATCCAAAGCAACGAGACAGATGCTCTGTTGAAGTGGAAAGCAAGCCTAGACAACAATAGCAAGGCTTTGCTTTCTTCATGGAATATTGGTAATTATCCTTGTAAATGGGAAGGAATTACATGTGATGATGACTCAAAATCCATCTACAAGGTAAATCTTGCCAATTTTGGACTAAACGACAATATTGGATTAATGTCCGATCTAGAAACTCTTGATTTGTCACTAAATAAACTCTCTGGTAGCATTCCAAATAGCATTGTTGGAAATCTTTATTCCCTTTCCACAATTCAGTTGGTAGGAAACAACCTCTCTGGACCTATCCCATCTTCTATAGGTAATTTGATAAATTTAGAATCTATGATTCTTAACCGAAATAATCTATCTGGACCAATTCCTTCCACCATTGGAAATTTAACAAAACTTAGTATACTTACCATTTTCTCAAATAAGCTCAGTGGCAATATTCCTAAAGAAATGAATAGGCTTATAAATATTGAATTATTTGAGTTAAGTGATAATAATTTCATAGGTCATTTACCTCAAAATATTTGTGTTGGTGGAAAGCTCAAAGTTTTCAATGGCCATGATAATCGATTCACAGGCCCTATTCCAGAGTGTTTGAATAGTTGCTCAAGCCTTACGAGAGTCAGGTTAGAGAAAAACCAACTAACCGGAAATGTAGAAGATATGTTTGATGTGTATCCAAATTTAGACTACATCGATTTGAGTGATAATCATTTTTTCGGCCATCTATCGCCAAAATGGGGAAAGTGCAAGAATCTCACAAGTCTTAAAATCTCCAACAATAATTTATCAGGAAACATATCACCAGAACTAGGTGGAGCAACAAATTTACATGTACTTGACTTATCTTCAAACCACCTTACAGGAAAAATTCCTAAAGACCTAGGAAATTTGACATCCTTGTTACAACTCTCATTAAATAACAATCATTTTTTTGGAGAAGTTCCTATAGAATTTGCATCATTGCAGGAACTAACTACTTTGGATCTTGCAACCAATAATTTAAGTGGCTTTATTCCAAAGCAACTTGGATTCTTACCTATGTTATTAAGTTTGAACTTGAGCCAAAATAAATTTGATGGAAACATTCTTTTTGTGATTGGTCAATTACAAGTGATTCAAAATCTTGACCTTAGTGGGAACTTTTTAGATGGAACCATACCAGAAATGCTTGGACAGTTGAAATACTTAGAAACATTGAATCTGTCACATAATAATCTTTCTGGTACCATTCCTCTGAGCTATAGTGAGATGTTAAGTTTGACGATTGTTGATATATCTTACAACCAATTGGAGGGTCCGATTCCAAACATTCCGGCCTTCAAAAATGCTCCAATTGAAGCCCTTAAAAATAACAAAGGGTTGTGTGGTAATATCTCTGGCCTAGAGCTTTGCTCAACATTAGGTAGCAACTTTCATAGTCATAAGACTAACAAAATTTTGGTGCTAGTTTTACCCCTCACTCTAGGCACTTTATTGTTAGCATTATTTGTTTATGGGCTCTCATACATTTTATTCCAAACTTTAAGAACAAAAGAAAATAAGCATGCAGAAGAAATTCAAACAAATAATCTATTTGCAATATGGAGCTTTGATGGCCAAATGGTGTATGAAAATATTATCGAAGCCACGGAAGAATTTGACAACAAACATCTCATTGGGGTAGGAGGACATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGTCAAGTGGTAGCTGTGAAGAAACTCCATTCATTAGAAAATGGAGAAGTGTCTAATCTAAAAGCTTTTGCAAGTGAGATAAGTGCTTTGACAGAAATCCGACATCGGAACATTGTAAAGTTATATGGGTTTTGTTCACATTCACTACACTCATTTTTGGTTTATGAGTTCTTAGAGAAGGGTAGTGTGGACAAAATTTTGAAAGATGATGAACTAGCAACTACATTTGATTGGAATATGAGAGTGAATGCCATTAAAGATATAGCTAATGCTTTATCTTATATGCATCATGATTGTTCTCCTGCAATTGTTCATCGTGATATATCGAGCAAAAATGTTGTTTTGGATTCCGAGTATGTAGCTCATGTTTCAGACTTTGGAACCGCTAAGTTTCTTAATCCAAATTCTTCCAACCAAACCGGTTTTGTAGGCACCTTTGGATATTCCGCTCCAGAACTTGCATACACAATGGAGGTAAATGAGAAATGTGATGTGTATAGTTTTGGGGTATTAACTTTGGAAATACTTTTTGGGATGCACCCTGGAGATGTTGTAACTTCTTTATGGCAACAACCTTCACTGAATGCTATGGACATTACACTTGATAATATGCCATTGATAGATAAGTGTGACCAACGTCTCCCTCAACCTACAGATACTATTGTTAAGGAGGTGATATCAATGATAAGAGTAGCAATTTATTGCTTGATTGAAAGCCCACGTTCTCGCCCTGCTATGGAGCAGGTTTGCAAGGAGCTTGTGATGTCAAAGTCATCTTGA | 2604 | 0.3556 | MLQNMKCLPMSCLLFLFCNLFVNATPFHAATKIQSNETDALLKWKASLDNNSKALLSSWNIGNYPCKWEGITCDDDSKSIYKVNLANFGLNDNIGLMSDLETLDLSLNKLSGSIPNSIVGNLYSLSTIQLVGNNLSGPIPSSIGNLINLESMILNRNNLSGPIPSTIGNLTKLSILTIFSNKLSGNIPKEMNRLINIELFELSDNNFIGHLPQNICVGGKLKVFNGHDNRFTGPIPECLNSCSSLTRVRLEKNQLTGNVEDMFDVYPNLDYIDLSDNHFFGHLSPKWGKCKNLTSLKISNNNLSGNISPELGGATNLHVLDLSSNHLTGKIPKDLGNLTSLLQLSLNNNHFFGEVPIEFASLQELTTLDLATNNLSGFIPKQLGFLPMLLSLNLSQNKFDGNILFVIGQLQVIQNLDLSGNFLDGTIPEMLGQLKYLETLNLSHNNLSGTIPLSYSEMLSLTIVDISYNQLEGPIPNIPAFKNAPIEALKNNKGLCGNISGLELCSTLGSNFHSHKTNKILVLVLPLTLGTLLLALFVYGLSYILFQTLRTKENKHAEEIQTNNLFAIWSFDGQMVYENIIEATEEFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLENGEVSNLKAFASEISALTEIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSVDKILKDDELATTFDWNMRVNAIKDIANALSYMHHDCSPAIVHRDISSKNVVLDSEYVAHVSDFGTAKFLNPNSSNQTGFVGTFGYSAPELAYTMEVNEKCDVYSFGVLTLEILFGMHPGDVVTSLWQQPSLNAMDITLDNMPLIDKCDQRLPQPTDTIVKEVISMIRVAIYCLIESPRSRPAMEQVCKELVMSKSS | 867 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01496 | 867 | FunFam | MDIS1-interacting receptor like kinase 2 | 666 | 867 | - | - | |
Trre2g01496 | 867 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 550 | 665 | - | - | |
Trre2g01496 | 867 | Pfam | Protein kinase domain | 588 | 860 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g01496 | 867 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 711 | 723 | IPR008266 | GO:0004672|GO:0006468 | |
Trre2g01496 | 867 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 89 | 865 | - | - | |
Trre2g01496 | 867 | ProSiteProfiles | Leucine-rich repeat profile. | 436 | 457 | IPR001611 | GO:0005515 | |
Trre2g01496 | 867 | SUPERFAMILY | Protein kinase-like (PK-like) | 568 | 862 | IPR011009 | - | |
Trre2g01496 | 867 | ProSiteProfiles | Protein kinase domain profile. | 587 | 863 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g01496 | 867 | Pfam | Leucine rich repeat | 414 | 471 | IPR001611 | GO:0005515 | |
Trre2g01496 | 867 | Pfam | Leucine Rich Repeat | 316 | 338 | IPR001611 | GO:0005515 | |
Trre2g01496 | 867 | ProSitePatterns | Protein kinases ATP-binding region signature. | 593 | 616 | IPR017441 | GO:0005524 | |
Trre2g01496 | 867 | SUPERFAMILY | RNI-like | 163 | 477 | - | - | |
Trre2g01496 | 867 | PRINTS | Leucine-rich repeat signature | 434 | 447 | - | - | |
Trre2g01496 | 867 | PRINTS | Leucine-rich repeat signature | 100 | 113 | - | - | |
Trre2g01496 | 867 | Pfam | Leucine rich repeat N-terminal domain | 36 | 74 | IPR013210 | - | |
Trre2g01496 | 867 | ProSiteProfiles | Leucine-rich repeat profile. | 316 | 339 | IPR001611 | GO:0005515 | |
Trre2g01496 | 867 | Gene3D | Ribonuclease Inhibitor | 216 | 506 | IPR032675 | - | |
Trre2g01496 | 867 | FunFam | Nuclear pore complex protein NUP107 | 34 | 186 | - | - | |
Trre2g01496 | 867 | SUPERFAMILY | L domain-like | 90 | 164 | - | - | |
Trre2g01496 | 867 | Gene3D | Transferase(Phosphotransferase) domain 1 | 666 | 867 | - | - | |
Trre2g01496 | 867 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 | 194 | 509 | - | - | |
Trre2g01496 | 867 | Gene3D | Phosphorylase Kinase; domain 1 | 547 | 665 | - | - | |
Trre2g01496 | 867 | Gene3D | Ribonuclease Inhibitor | 34 | 193 | IPR032675 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01496 | Trre-Chr2 | 11939599 | 11948636 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01496 | 94 | 759 | Receptor kinase-like Gene Family | AT4G08850 | 45.387 | 0.0 | 583 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Trre2g01496 | Pkinase | 1.5e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01496 | - | - | tpra:123910542 | 1211.05 |