Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01496 ATGCTTCAGAATATGAAGTGTTTACCAATGTCGTGTCTTCTTTTTCTCTTTTGTAATTTGTTTGTAAATGCCACACCATTTCATGCTGCAACTAAAATCCAAAGCAACGAGACAGATGCTCTGTTGAAGTGGAAAGCAAGCCTAGACAACAATAGCAAGGCTTTGCTTTCTTCATGGAATATTGGTAATTATCCTTGTAAATGGGAAGGAATTACATGTGATGATGACTCAAAATCCATCTACAAGGTAAATCTTGCCAATTTTGGACTAAACGACAATATTGGATTAATGTCCGATCTAGAAACTCTTGATTTGTCACTAAATAAACTCTCTGGTAGCATTCCAAATAGCATTGTTGGAAATCTTTATTCCCTTTCCACAATTCAGTTGGTAGGAAACAACCTCTCTGGACCTATCCCATCTTCTATAGGTAATTTGATAAATTTAGAATCTATGATTCTTAACCGAAATAATCTATCTGGACCAATTCCTTCCACCATTGGAAATTTAACAAAACTTAGTATACTTACCATTTTCTCAAATAAGCTCAGTGGCAATATTCCTAAAGAAATGAATAGGCTTATAAATATTGAATTATTTGAGTTAAGTGATAATAATTTCATAGGTCATTTACCTCAAAATATTTGTGTTGGTGGAAAGCTCAAAGTTTTCAATGGCCATGATAATCGATTCACAGGCCCTATTCCAGAGTGTTTGAATAGTTGCTCAAGCCTTACGAGAGTCAGGTTAGAGAAAAACCAACTAACCGGAAATGTAGAAGATATGTTTGATGTGTATCCAAATTTAGACTACATCGATTTGAGTGATAATCATTTTTTCGGCCATCTATCGCCAAAATGGGGAAAGTGCAAGAATCTCACAAGTCTTAAAATCTCCAACAATAATTTATCAGGAAACATATCACCAGAACTAGGTGGAGCAACAAATTTACATGTACTTGACTTATCTTCAAACCACCTTACAGGAAAAATTCCTAAAGACCTAGGAAATTTGACATCCTTGTTACAACTCTCATTAAATAACAATCATTTTTTTGGAGAAGTTCCTATAGAATTTGCATCATTGCAGGAACTAACTACTTTGGATCTTGCAACCAATAATTTAAGTGGCTTTATTCCAAAGCAACTTGGATTCTTACCTATGTTATTAAGTTTGAACTTGAGCCAAAATAAATTTGATGGAAACATTCTTTTTGTGATTGGTCAATTACAAGTGATTCAAAATCTTGACCTTAGTGGGAACTTTTTAGATGGAACCATACCAGAAATGCTTGGACAGTTGAAATACTTAGAAACATTGAATCTGTCACATAATAATCTTTCTGGTACCATTCCTCTGAGCTATAGTGAGATGTTAAGTTTGACGATTGTTGATATATCTTACAACCAATTGGAGGGTCCGATTCCAAACATTCCGGCCTTCAAAAATGCTCCAATTGAAGCCCTTAAAAATAACAAAGGGTTGTGTGGTAATATCTCTGGCCTAGAGCTTTGCTCAACATTAGGTAGCAACTTTCATAGTCATAAGACTAACAAAATTTTGGTGCTAGTTTTACCCCTCACTCTAGGCACTTTATTGTTAGCATTATTTGTTTATGGGCTCTCATACATTTTATTCCAAACTTTAAGAACAAAAGAAAATAAGCATGCAGAAGAAATTCAAACAAATAATCTATTTGCAATATGGAGCTTTGATGGCCAAATGGTGTATGAAAATATTATCGAAGCCACGGAAGAATTTGACAACAAACATCTCATTGGGGTAGGAGGACATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGTCAAGTGGTAGCTGTGAAGAAACTCCATTCATTAGAAAATGGAGAAGTGTCTAATCTAAAAGCTTTTGCAAGTGAGATAAGTGCTTTGACAGAAATCCGACATCGGAACATTGTAAAGTTATATGGGTTTTGTTCACATTCACTACACTCATTTTTGGTTTATGAGTTCTTAGAGAAGGGTAGTGTGGACAAAATTTTGAAAGATGATGAACTAGCAACTACATTTGATTGGAATATGAGAGTGAATGCCATTAAAGATATAGCTAATGCTTTATCTTATATGCATCATGATTGTTCTCCTGCAATTGTTCATCGTGATATATCGAGCAAAAATGTTGTTTTGGATTCCGAGTATGTAGCTCATGTTTCAGACTTTGGAACCGCTAAGTTTCTTAATCCAAATTCTTCCAACCAAACCGGTTTTGTAGGCACCTTTGGATATTCCGCTCCAGAACTTGCATACACAATGGAGGTAAATGAGAAATGTGATGTGTATAGTTTTGGGGTATTAACTTTGGAAATACTTTTTGGGATGCACCCTGGAGATGTTGTAACTTCTTTATGGCAACAACCTTCACTGAATGCTATGGACATTACACTTGATAATATGCCATTGATAGATAAGTGTGACCAACGTCTCCCTCAACCTACAGATACTATTGTTAAGGAGGTGATATCAATGATAAGAGTAGCAATTTATTGCTTGATTGAAAGCCCACGTTCTCGCCCTGCTATGGAGCAGGTTTGCAAGGAGCTTGTGATGTCAAAGTCATCTTGA 2604 0.3556 MLQNMKCLPMSCLLFLFCNLFVNATPFHAATKIQSNETDALLKWKASLDNNSKALLSSWNIGNYPCKWEGITCDDDSKSIYKVNLANFGLNDNIGLMSDLETLDLSLNKLSGSIPNSIVGNLYSLSTIQLVGNNLSGPIPSSIGNLINLESMILNRNNLSGPIPSTIGNLTKLSILTIFSNKLSGNIPKEMNRLINIELFELSDNNFIGHLPQNICVGGKLKVFNGHDNRFTGPIPECLNSCSSLTRVRLEKNQLTGNVEDMFDVYPNLDYIDLSDNHFFGHLSPKWGKCKNLTSLKISNNNLSGNISPELGGATNLHVLDLSSNHLTGKIPKDLGNLTSLLQLSLNNNHFFGEVPIEFASLQELTTLDLATNNLSGFIPKQLGFLPMLLSLNLSQNKFDGNILFVIGQLQVIQNLDLSGNFLDGTIPEMLGQLKYLETLNLSHNNLSGTIPLSYSEMLSLTIVDISYNQLEGPIPNIPAFKNAPIEALKNNKGLCGNISGLELCSTLGSNFHSHKTNKILVLVLPLTLGTLLLALFVYGLSYILFQTLRTKENKHAEEIQTNNLFAIWSFDGQMVYENIIEATEEFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLENGEVSNLKAFASEISALTEIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSVDKILKDDELATTFDWNMRVNAIKDIANALSYMHHDCSPAIVHRDISSKNVVLDSEYVAHVSDFGTAKFLNPNSSNQTGFVGTFGYSAPELAYTMEVNEKCDVYSFGVLTLEILFGMHPGDVVTSLWQQPSLNAMDITLDNMPLIDKCDQRLPQPTDTIVKEVISMIRVAIYCLIESPRSRPAMEQVCKELVMSKSS 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01496 867 FunFam MDIS1-interacting receptor like kinase 2 666 867 - -
Trre2g01496 867 FunFam Leucine-rich repeat receptor protein kinase MSP1 550 665 - -
Trre2g01496 867 Pfam Protein kinase domain 588 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01496 867 ProSitePatterns Tyrosine protein kinases specific active-site signature. 711 723 IPR008266 GO:0004672|GO:0006468
Trre2g01496 867 PANTHER LEUCINE RICH REPEAT KINASE 2 89 865 - -
Trre2g01496 867 ProSiteProfiles Leucine-rich repeat profile. 436 457 IPR001611 GO:0005515
Trre2g01496 867 SUPERFAMILY Protein kinase-like (PK-like) 568 862 IPR011009 -
Trre2g01496 867 ProSiteProfiles Protein kinase domain profile. 587 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01496 867 Pfam Leucine rich repeat 414 471 IPR001611 GO:0005515
Trre2g01496 867 Pfam Leucine Rich Repeat 316 338 IPR001611 GO:0005515
Trre2g01496 867 ProSitePatterns Protein kinases ATP-binding region signature. 593 616 IPR017441 GO:0005524
Trre2g01496 867 SUPERFAMILY RNI-like 163 477 - -
Trre2g01496 867 PRINTS Leucine-rich repeat signature 434 447 - -
Trre2g01496 867 PRINTS Leucine-rich repeat signature 100 113 - -
Trre2g01496 867 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Trre2g01496 867 ProSiteProfiles Leucine-rich repeat profile. 316 339 IPR001611 GO:0005515
Trre2g01496 867 Gene3D Ribonuclease Inhibitor 216 506 IPR032675 -
Trre2g01496 867 FunFam Nuclear pore complex protein NUP107 34 186 - -
Trre2g01496 867 SUPERFAMILY L domain-like 90 164 - -
Trre2g01496 867 Gene3D Transferase(Phosphotransferase) domain 1 666 867 - -
Trre2g01496 867 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 194 509 - -
Trre2g01496 867 Gene3D Phosphorylase Kinase; domain 1 547 665 - -
Trre2g01496 867 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01496 Trre-Chr2 11939599 11948636 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01496 94 759 Receptor kinase-like Gene Family AT4G08850 45.387 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre2g01496 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01496 - - tpra:123910542 1211.05