Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01493 ATGCTTCAGAACATGAAGCTTTTACCAATGTCATGTCTTCTTTTGTTCTTTTGTTTGTTTGTAATGGCCACACCATTCCATGCTGCAACAAAAATCCAAAGCAACGAGGCAGATGCTCTGTTGAAGTGGAAAGCAAGCCTTGACCACAATAGCAAGGCTTTGCTTTCTTCATGGAATATTGGTAATAAGCATTGCAATTGGGTTGGAATCACATGCGATGACGAGTCAAAATCTATCTACAAGGTAAATCTTGCCAATATTGGACTAAAAGGTACGCTTCAAAGTCTCAATTTTTCATCACTTTCAAAAGTCCGCAATTTAGTTTTATCGAACAACTCTTTCTATGGAGTTGTTCCACAACATATTGGTGTAATGTCCAATCTAAACACTCTTAATTTGTCACTAAATAATCTCTCTGGTAGTATTCCCAATAGCGTTGGTAATTTGTCCAAATTATCTTATCTTGGTCTCAGTTCAAATCATTTCACTGGAATTATTCCATCCGAGATAACCCAATTGGTTGGTCTTTATGTATTGTCTATGTCTCATAACAATGATTTAAGTGGATCCCTCCCAAAAGAAATAGGTAGACTAAGGAATCTTACTACACTTGATTTCTCTTTCTGCAATCTCACAGGGACTATACCCATCTCAATAGAAAAAATAACCAATTTGTCACATCTTGATTTGGGAGTAAACAATTTTTATGGCAGCATTCCTAAGAGAATATGGAAAATGGACCTAAAGTATTTGGCACTTGGAATTAATTACTTCATTGGTTCTATCTCACAAGAAGTTTTCCAGTTAAGAAACCTTGAGGGTTTAGCTCTCCAAAATAGTGGTCTTACTGGTTCCATGCCAGAGGATCTTCAAATGGTGAAGAATTTAAAAAAAGTTTTAATTGGTGGATGCAATCTCACTGGGTCTATACCAATATCAATAGGATTATTGACCAATTTAACGTTTCTCAGGTTAGAGAAAAACCAACTTTCTGGCCACATTCCTCGTGAAATTGGGAATTTGGTCAATCTCAAGAGCCTAAATCTTCACATTAATGATCTTTCCGGCTCTATTCCTCGAGAAGTTGGATTCCTAAAACAACTCGATCAAATTGATTTTTCTTCTAACTATCTCTTTGGCACAATCCCTTCCACAATTGGAAACATGAGCAATTTATCTTTTCTTTACCTGTATGTCAACCATCTCAATGGTAGCATTCCTAGTGAAGTTGGAAATCTTAATTCCCTTTCCACAATTCAGTTGTTACATAACAACCTCTCTGGACCTATCCCATCTTCTATAGGTAATTTGATAAATTTAGAATCTATACTCCTTGACCAAAATCAACTATCCGGACCAATTCCTTCCAGTATTGGAAATTTGACAAAACTTAGTACACTCAGCGTTGCCTTAAACAACCTCTATGGACCTATCCCATCTTCTATTGGAAATTTGACAAAACTTAGTGAACTCAGCGTTCTCTCAAACAACCTCAGTGGCAATATTCCAAAAGAAATGAATAGGATTACCAATTTAGAAAAGTTGCAGTTAGCTGATAATAATTTCATAGGTCATTTACCTCACAACATTTGTGTTGGTGGGAAGTTAACTAACTTCTCCGCTAGTGATAATCATTTCACAGGCTTAGTTCCAAAGAGTTTGAAGAATTGCTCCAGTCTTGTGAGAGTTAGGCTTCAAGGCAATCAACTAACTGACAATATAACAAATAGTTTTGGTGTGTATCCAAATTTGGACTACATGGAATTGAGTGATAATAATTTGTATGGTCATCTATCATCAAATTGGGGAAAGTGCAAGAATCTCACATCCCTTAAAATCTCTAATAACAATTTATCAGGAATCATCCCAAAAGACCTAGGTGGAGCAACTTTGTTACATGTACTTAACTTGTCTTCAAACCATCTTATAGGAAACATTCCAAATGACATAGGCAACTTGACTTCATTGATCCAACTCTCGTTAAGTAACAATCACCTTTCAGGAGAAGTTCCTCTTCACATTGCATCACTTCATAAACTATCAGCCTTAGAACTTGCAACAAATAATTTAAGTGGCTTCATCCCAGAACAACTTGGAAGCTTGTCTGGGTTATTGCACTTGAATATGAGCCAAAATAAGTTTCATGGAAACATTCCTCGTGATTTTGGCCATTTAAAAGTTCTTGAAGATCTTGATCTAAGTGGCAATTTTTTGAATGGAACCATACCAGCAATGCTTGGACAATTAAATAGCTTAGAAACATTGAATCTTTCACATAATTATCTTTCTGGTACCATTCCCTTGAGCTATGGTGAGATGTTAAGCTTGACAACTGTTGATATATCATACAACCGGTTTGAGGGTCCGATTCCAACCATTCCAGCCTTTCAAAAAGCACACATTGAAGAACTGAGAAACAACAAAGACTTGTGTGGTAATGCCTCTAGCCTAAAGCTTTGTCCAACATCTAGTGGTAACTCTCATACTCCAAAGACTAACAAGATTTTGGTACTAGTCTTACCCCTCACTTTTGGCACTGTATTGATAGCACTATTTGTTTATTGGTTCTCATATCATCTATGGAGAACTTCAAGAACAAAAGAAAACAATGTTGCTGAAGAATCACACACTGAAAATCTATTTGCAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGAGTTTGACAGCAAGCATCTTATTGGGGTTGGAGGATATGGAAGTGTTTACAAAGCAGAGTTGCCTACAGGACAAGTTGTAGCTGTGAAGAAACTCCATTCATTACAAAATGGAGAAGTGTCGAATTTGAAAGCTTTTGCAAGTGAGATTCAAGCTTTAACAGAAATCCGACATCGAAACATTGTGAAGTTATATGGATATTGCTCACATCCATTGCACTCATTTTTGGCAGGAGAACAAGAACAAGAACTACAAGAAGAAGAAAAAGATTGGCATCGTCCAAGGGCAGGACCTCTTAGTAAGCAGGAGCAGTTAGATTTTGCAAGATGGTTCATTCCGACATCTGCTGGTCTCCATTTAGACGTGCTGAAAATTTTTGCTGAAAAAGATCCACCGATTTCTACTGACAATGAAATGTTAAACAATAATATTCAGCGTTTCAAGGATGGTCAGCTTACTCTAAAATCACCTATGACAGAATTGGCACAGAAGCAGTTTCCTGAATGTTTGCTGGACTTTGAAGATTATAATCCGGATAAACCATATCCCATGCCTCAACATAGTCTATTTTTCCCCCCCTCTGATGATGAACAAGAGGATGAAGACCCTTATGAATGA 3318 0.3686 MLQNMKLLPMSCLLLFFCLFVMATPFHAATKIQSNEADALLKWKASLDHNSKALLSSWNIGNKHCNWVGITCDDESKSIYKVNLANIGLKGTLQSLNFSSLSKVRNLVLSNNSFYGVVPQHIGVMSNLNTLNLSLNNLSGSIPNSVGNLSKLSYLGLSSNHFTGIIPSEITQLVGLYVLSMSHNNDLSGSLPKEIGRLRNLTTLDFSFCNLTGTIPISIEKITNLSHLDLGVNNFYGSIPKRIWKMDLKYLALGINYFIGSISQEVFQLRNLEGLALQNSGLTGSMPEDLQMVKNLKKVLIGGCNLTGSIPISIGLLTNLTFLRLEKNQLSGHIPREIGNLVNLKSLNLHINDLSGSIPREVGFLKQLDQIDFSSNYLFGTIPSTIGNMSNLSFLYLYVNHLNGSIPSEVGNLNSLSTIQLLHNNLSGPIPSSIGNLINLESILLDQNQLSGPIPSSIGNLTKLSTLSVALNNLYGPIPSSIGNLTKLSELSVLSNNLSGNIPKEMNRITNLEKLQLADNNFIGHLPHNICVGGKLTNFSASDNHFTGLVPKSLKNCSSLVRVRLQGNQLTDNITNSFGVYPNLDYMELSDNNLYGHLSSNWGKCKNLTSLKISNNNLSGIIPKDLGGATLLHVLNLSSNHLIGNIPNDIGNLTSLIQLSLSNNHLSGEVPLHIASLHKLSALELATNNLSGFIPEQLGSLSGLLHLNMSQNKFHGNIPRDFGHLKVLEDLDLSGNFLNGTIPAMLGQLNSLETLNLSHNYLSGTIPLSYGEMLSLTTVDISYNRFEGPIPTIPAFQKAHIEELRNNKDLCGNASSLKLCPTSSGNSHTPKTNKILVLVLPLTFGTVLIALFVYWFSYHLWRTSRTKENNVAEESHTENLFAIWSFDGKMVYENIIEATEEFDSKHLIGVGGYGSVYKAELPTGQVVAVKKLHSLQNGEVSNLKAFASEIQALTEIRHRNIVKLYGYCSHPLHSFLAGEQEQELQEEEKDWHRPRAGPLSKQEQLDFARWFIPTSAGLHLDVLKIFAEKDPPISTDNEMLNNNIQRFKDGQLTLKSPMTELAQKQFPECLLDFEDYNPDKPYPMPQHSLFFPPSDDEQEDEDPYE 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01493 1105 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Trre2g01493 1105 Pfam Leucine rich repeat 679 736 IPR001611 GO:0005515
Trre2g01493 1105 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 185 262 - -
Trre2g01493 1105 Gene3D Ribonuclease Inhibitor 507 823 IPR032675 -
Trre2g01493 1105 Gene3D Ribonuclease Inhibitor 188 246 IPR032675 -
Trre2g01493 1105 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 302 720 - -
Trre2g01493 1105 SUPERFAMILY L domain-like 74 403 - -
Trre2g01493 1105 Gene3D Phosphorylase Kinase; domain 1 862 979 - -
Trre2g01493 1105 SUPERFAMILY RNI-like 472 789 - -
Trre2g01493 1105 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 265 532 - -
Trre2g01493 1105 MobiDBLite consensus disorder prediction 1077 1105 - -
Trre2g01493 1105 ProSitePatterns Protein kinases ATP-binding region signature. 908 931 IPR017441 GO:0005524
Trre2g01493 1105 SMART LRR_typ_2 389 413 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 509 533 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 317 340 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 222 246 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 437 461 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 701 724 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 149 173 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 653 677 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 725 749 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 341 365 IPR003591 -
Trre2g01493 1105 SMART LRR_typ_2 125 148 IPR003591 -
Trre2g01493 1105 SUPERFAMILY Protein kinase-like (PK-like) 885 973 IPR011009 -
Trre2g01493 1105 Pfam Protein kinase domain 904 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01493 1105 FunFam Uncharacterized protein 533 829 - -
Trre2g01493 1105 SMART tyrkin_6 902 1073 IPR020635 GO:0004713|GO:0006468
Trre2g01493 1105 FunFam Nuclear pore complex protein NUP107 33 184 - -
Trre2g01493 1105 Gene3D Ribonuclease Inhibitor 247 506 IPR032675 -
Trre2g01493 1105 ProSiteProfiles Protein kinase domain profile. 902 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01493 1105 ProSiteProfiles Leucine-rich repeat profile. 127 149 IPR001611 GO:0005515
Trre2g01493 1105 Gene3D Ribonuclease Inhibitor 33 187 IPR032675 -
Trre2g01493 1105 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Trre2g01493 1105 FunFam Leucine-rich repeat receptor protein kinase MSP1 864 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01493 Trre-Chr2 11929607 11933979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01493 207 993 Receptor kinase-like Gene Family AT4G08850 41.169 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre2g01493 Pkinase 4.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01493 - - tpra:123910542 1098.96