Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01485 ATGGCTGGAATAAGAGAACAAGATCAATACATGCCAATAGCAAATGTGATTCGAATAATGCGAAGAATCCTTCCGTCACACGCAAAAATCTCCGATGATGCAAAAGAAACGATTCAAGAATGCGTTTCGGAGTACATAAGCTTCATAACTTCCGAAGCAAACGAGCGTTGCCAAAACGAACAAAGGAAAACAATTACAGCAGAAGATTTACTTTGGGCTATGGGGAAACTTGGTTTTGATGATTATGTTAATCCTTTAGCATTTTACCTTCAATGTTACCGTGAAAGTGAAGGCGAACCCGCTTCTATTCGACGCACTTCTTCTCATGTTTTGTCTCATCCTCCTCCTATTCCTCTTCCAATGCAACAGCAGATGCCATTGTTATCGGCTATGCCGGTTTCGAATAATGATAATAATAAGTGTTATGGTGTTGGTTATGGTTTTGATTTTGATCAAGGGTTTTATAGAGATGGTGGTGGTGGTGGTGGTGGTGATGCTTCTTCTTCTGCTGCTTTTGTACCGAATTTTGATTATTGTTTTCCTCATCACAAACGTGATAATTATAACATGTGA 573 0.3927 MAGIREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANERCQNEQRKTITAEDLLWAMGKLGFDDYVNPLAFYLQCYRESEGEPASIRRTSSHVLSHPPPIPLPMQQQMPLLSAMPVSNNDNNKCYGVGYGFDFDQGFYRDGGGGGGGDASSSAAFVPNFDYCFPHHKRDNYNM 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01485 190 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Trre2g01485 190 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Trre2g01485 190 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Trre2g01485 190 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre2g01485 190 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre2g01485 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Trre2g01485 190 SUPERFAMILY Histone-fold 7 107 IPR009072 GO:0046982
Trre2g01485 190 Gene3D Histone, subunit A 2 114 IPR009072 GO:0046982
Trre2g01485 190 FunFam Nuclear transcription factor Y subunit B-6 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01485 Trre-Chr2 11890865 11891437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01485 4 114 CCAAT-HAP3 Transcription Factor Family AT5G47670 71.795 6.99e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre2g01485 CBFD_NFYB_HMF 9.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01485 K08065 - gmx:547959 192.2