Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01461 ATGTCTAACTGCAAGGAAATAACAACTACTACAACTAACGCCGTCGAAACCACAAACCAAACCGTTAAAAAACCGCCGTCAAAAGACCGTCACAGCAAAGTTGACGGACGTGGAAGAAGAATACGTATGCCAATAATATGCGCCGCACGTGTTTTCCAGTTAACACGTGAGTTAGGTCATAAATCCGACGGTCAAACTATTGAATGGCTTCTCCGACAAGCTGAACCGTCGATTATCGCCGCTACCGGTACCGGAACTACTCCGGCTTCATTCTCTTCTCTTTCTGAACATAAACCTTTACTTCCTCCTTCTCCTTTCATTCTTGGTAAACGTTTAAGGTCTGAACATGATGAAGCTGTTTCGATTGCTGCTCCGACTGCTCCGCCGGGTATATGGCGGCCGGATTTTGCTCAGCTTTGGAGTTTTGCTGCTGCTCAACCTCCGCCTGAAGTTCTTTCAATTTCACCGCATCAGCATCAGCAACAACATCAGCATAATTCGTTGTTTCATCATCAACAACAGCAGCAGAATCAGCACCAGCACCAGCATCAGCATCAACAGCAAGGTTCTATGGGAGAAGCTTCGGCGGCGAGGTTAGGGAATTATCTTCCTGGACACTTGAATTTGCTTGCTTCGTTGTCTGGTGGTAATGGTAATTCCGGCCGAGGAGATGACGAGGATCGTTGA 687 0.4702 MSNCKEITTTTTNAVETTNQTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPLLPPSPFILGKRLRSEHDEAVSIAAPTAPPGIWRPDFAQLWSFAAAQPPPEVLSISPHQHQQQHQHNSLFHHQQQQQNQHQHQHQHQQQGSMGEASAARLGNYLPGHLNLLASLSGGNGNSGRGDDEDR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01461 228 Pfam TCP family transcription factor 27 186 IPR017887 -
Trre2g01461 228 ProSiteProfiles TCP domain profile. 27 81 IPR017887 -
Trre2g01461 228 MobiDBLite consensus disorder prediction 23 39 - -
Trre2g01461 228 MobiDBLite consensus disorder prediction 150 194 - -
Trre2g01461 228 MobiDBLite consensus disorder prediction 153 194 - -
Trre2g01461 228 MobiDBLite consensus disorder prediction 18 39 - -
Trre2g01461 228 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 187 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01461 Trre-Chr2 11711190 11711876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01461 21 228 TCP Transcription Factor Family AT5G23280 60.169 2.91e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre2g01461 TCP 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01461 K16221 - gmx:100795254 243.817